Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02991 ATGGGTCGTGGAAAGATTGAGATAAAGCTCATCCAGAACCCAACCAACAGGCAAGTTACATACTCAAAGAGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTCTCACTCATCATGTTCTCCAAGAACAACAAGATGCATGAATACATCGGCCCTGGCCTTAGCACAAAGAAGTTCATTGATCAGTATCGGAAAACTTTGGGAGATATCGATCTCTGGCATTCTCACTATGAGAAAATGCTTGAGAATTTGAAGAAACTCAAAGATACTAATAATAAGCTCAGAAGACAGATCAGGAATCGGATAGGGGAGGGTAGCTTGGATATGGATGATATGAGCTCTCAGCAACTGCGTACTCTTGAAGAGGATATGCCCGCCTCTGTGGTCGTCGGCGGCGGCAGTGACAGAGGGTGCCATCGTCGGTCTTATTCTCGTCGCCGCCCTGGATGTCTCTGCTTGGCTTCTCTCTCTTCAAGCTCGCTCTCTCTCCCTCTCCGATCTCGCTCTGTCTCACGCGAAACGCGAAGGTCTCTGCTCGCTTGTCCTCCTCGCCGTCACCTCCATTTAACTGCTCGGCCATCACCTCCTCGCGGACGGCTCTGTTACTCGGCTGCCTTGTCTTCTCCACCCTCCGTCGTGCTTCCTCACCTCTGTGCCCTGGAAGTCAGTAGAGCAGCACCATTGGCTTCACTGGTAAGATCTTGA 729 0.4993 MGRGKIEIKLIQNPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIGPGLSTKKFIDQYRKTLGDIDLWHSHYEKMLENLKKLKDTNNKLRRQIRNRIGEGSLDMDDMSSQQLRTLEEDMPASVVVGGGSDRGCHRRSYSRRRPGCLCLASLSSSSLSLPLRSRSVSRETRRSLLACPPRRHLHLTARPSPPRGRLCYSAALSSPPSVVLPHLCALEVSRAAPLASLVRS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02991 242 Gene3D - 14 109 IPR036879 GO:0003677|GO:0046983
Aip01g02991 242 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Aip01g02991 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip01g02991 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 136 - -
Aip01g02991 242 Pfam K-box region 82 135 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip01g02991 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Aip01g02991 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip01g02991 242 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Aip01g02991 242 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 136 - -
Aip01g02991 242 Coils Coil 85 112 - -
Aip01g02991 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip01g02991 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip01g02991 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip01g02991 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02991 Aip-Chr1 132316572 132320303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02991 1 136 MADS-box Gene Family AT3G54340 56.618 9.86e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip01g02991 K-box 2.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02991 K09264 - gmx:100784496 240.736