Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02978 ATGATGTTCATATCTCGATTAGGAAGAGCTACTGTATACCCATTTGCATCTGCAACCCAAAAATGCCACCTTTTTCTTTTCCTACGCTCACACTTGATCTCAACCACTTCCCAACCAGTATCGTGCCTCACAGATAAGTGTGAATTCTCCCAAGAATCTCCTCTCAAATTATTCAGCAAGGTTCGTTTCAATTCCATCAGACCCAGCAAGGCCGATTCAACCATCGCATTTTTCAGAACCCACGGTTTCTCAGATGCCCAAATCACCAAAATAACAACTAGGGTACCGGCTTTCCTACGCTGTAACCCTAACAAAAGGATTTTACCAAAGTTACAATTTTTAGCCTCCAAAGGTGCTTCTAACTCTGACATTCTCCGAATTGTAACTGGCTACCCTGAATTACTACTTCTTGGCCTCAAGAACGGTATAGTTCCTGCTTTTGATTTGATTAATAGGTTCTTATCCTCTGATGAAAAAACCATGAATTGTGTAATTTCATCCCCTGCATCCATGGGTCACTTCTATGTAAGCAAGAATGTGAAATTGCTTCTTGATGAGGGCTTAACTCATTCCCAAATTAAGCGCTTGTTTCAATGCAGGCCTTCTGTATTAGCCTCTTCTACTTTGTGGAAAACTGTGGCAGAAGTGAAGAAATTAGGGGTTGATCCTTCTTTGATGAATTTCAGTGTGGCATTGATGGCTAAGAAGGCTGTGGCGAAATCCGGGTGGGATGCCAAAGTTGAAGCCTGTAAGACTTGGGGCTGGTCGGAGGAACAATTTTCCGATGTGTTTAGGAAGCATCCGCAGATTATGCTTCGGTCCGAGAAGAAAATCATAGCAGTCATGAGCTTTTGGGTTGGTAAGCTTGGTTGGGATCCTTCGTTGCTGTGCGTGGCGCCGGTAATCTTTGGATTGAGCTTGGAAGAAAGGATTATTCCAAGGGCTTTGGTTGTGCAGTATCTTCTCTCCAAAGGTTTGATGAAGAAGGATGCTAGCTTAGCTACACCATTTTTTGTGACTCACAAGAAGTTCCTGGAAAGATATGTGACACGTTTTGAGAAGCATCATTCATCTCAGCTATTAAAGCTATTACATAGCAAAACATGTTAG 1110 0.4243 MMFISRLGRATVYPFASATQKCHLFLFLRSHLISTTSQPVSCLTDKCEFSQESPLKLFSKVRFNSIRPSKADSTIAFFRTHGFSDAQITKITTRVPAFLRCNPNKRILPKLQFLASKGASNSDILRIVTGYPELLLLGLKNGIVPAFDLINRFLSSDEKTMNCVISSPASMGHFYVSKNVKLLLDEGLTHSQIKRLFQCRPSVLASSTLWKTVAEVKKLGVDPSLMNFSVALMAKKAVAKSGWDAKVEACKTWGWSEEQFSDVFRKHPQIMLRSEKKIIAVMSFWVGKLGWDPSLLCVAPVIFGLSLEERIIPRALVVQYLLSKGLMKKDASLATPFFVTHKKFLERYVTRFEKHHSSQLLKLLHSKTC 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02978 369 SMART mt_12 194 222 IPR003690 GO:0003690|GO:0006355
Aip01g02978 369 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Aip01g02978 369 SMART mt_12 293 327 IPR003690 GO:0003690|GO:0006355
Aip01g02978 369 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Aip01g02978 369 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Aip01g02978 369 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 29 367 - -
Aip01g02978 369 PANTHER CGI-12 PROTEIN-RELATED 29 367 IPR003690 GO:0003690|GO:0006355
Aip01g02978 369 Pfam mTERF 76 282 IPR003690 GO:0003690|GO:0006355
Aip01g02978 369 Pfam mTERF 177 344 IPR003690 GO:0003690|GO:0006355
Aip01g02978 369 Gene3D Transcription termination factor 3, mitochondrial 175 357 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02978 Aip-Chr1 132155113 132156506 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip01g02978 mTERF 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02978 K15032 - gmx:102666739 311.612