Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02976 ATGTTCATATCTCGATTAGGAAGAGCTACTGTGTACCCATTTGCATCTGCAACCCAAAAATGCCACCTTTTTCTTTTCCAACACTCACACTTGATCTCAACCACTTCCCAATCAGTATCGTGCCTCACAGATAAGTGTGGATTCTCCCAAGAATCTGCTCTCAAATTATTCAGCAAGGTTCATTTCAATTCCATCAGACCCAGCAAGGCCGATTCAATCATCGCATTTTTCAGAACCCACGGTTTCTCAGATGCCCAAATCACCAAAATAACAACTAGGGTACCGGCTCTCCTACGCTGTAACCCTAACAAAAGGATTTTACCAAAGCTACAATTTTTAGCCTCCAAAGGTGCTTCTAACTCTGACATTCTCCGAATTGTAACTGGCTACCCTGAATTACTGCTTCTTGGCCTCAAGAACCGTATAGTTCCTGCTTTTGATTTGATTAGGAGGTTCTTACCCTCTGATAAAAAAACCATGAATTGTGTAATTTCATCCCCTGCATGCATTAGTCACTTCTATGTAAGCAAGAATGTGAAATTGCTTCTTGATGAGGGCTTAACTCATTCCCACATTAAGCGCTTGCTTCAATGCAGGCCTTCAATATTATCCACTTCTACTTTGTGGAAAACTGTGGCAGAAGTGAAGAAATTAGGGATTGATCCTTCTTTGATGAATTTCAGTGTGGCATTGATGGCCAAGAAGGCTGTGGCGAAATCCGGGTGGGATGCCAAAGTTGAAGCCTGTAAGACTTGGGGCTGGTCGGAGGAACAATTTTCCGATGTGTTTAGGAAGCATGCGCAGTTTATGCTTCGGTCCGAGAAGAAAATCATAGCAGTCATGAGCTTTTGGGTTGGTAAGCTTGGTTGGGATCCTTCGGTGCTGTGCGTGGCGCCGGTAATCTTTGGATTGAGCTTGGAAGAAAGGATTATCCCAAGGGCATTGGTTGTGCAGTATCTTCTCTCCAAAGGTTTGATGAAGAAGGATGCTAGCTTAGCCACACCATTTTATCTGACTGACAAGAAGTTCCTGGAAAGATATGTGACACGTTTTGAGAAGCATCATTCATCTCAGCTATTAAAGATATTACATAGCAAAACATGTTAG 1107 0.4273 MFISRLGRATVYPFASATQKCHLFLFQHSHLISTTSQSVSCLTDKCGFSQESALKLFSKVHFNSIRPSKADSIIAFFRTHGFSDAQITKITTRVPALLRCNPNKRILPKLQFLASKGASNSDILRIVTGYPELLLLGLKNRIVPAFDLIRRFLPSDKKTMNCVISSPACISHFYVSKNVKLLLDEGLTHSHIKRLLQCRPSILSTSTLWKTVAEVKKLGIDPSLMNFSVALMAKKAVAKSGWDAKVEACKTWGWSEEQFSDVFRKHAQFMLRSEKKIIAVMSFWVGKLGWDPSVLCVAPVIFGLSLEERIIPRALVVQYLLSKGLMKKDASLATPFYLTDKKFLERYVTRFEKHHSSQLLKILHSKTC 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02976 368 Gene3D Transcription termination factor 3, mitochondrial 171 356 IPR038538 -
Aip01g02976 368 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 366 - -
Aip01g02976 368 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Aip01g02976 368 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Aip01g02976 368 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Aip01g02976 368 SMART mt_12 193 221 IPR003690 GO:0003690|GO:0006355
Aip01g02976 368 SMART mt_12 292 326 IPR003690 GO:0003690|GO:0006355
Aip01g02976 368 Pfam mTERF 175 344 IPR003690 GO:0003690|GO:0006355
Aip01g02976 368 Pfam mTERF 75 277 IPR003690 GO:0003690|GO:0006355
Aip01g02976 368 PANTHER CGI-12 PROTEIN-RELATED 28 366 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02976 Aip-Chr1 132137502 132138608 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip01g02976 mTERF 8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02976 K15032 - gmx:102666622 321.627