Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02957 ATGGAAGTAAAAGGAAGCAGCAACAGCAACAACAGCGCCGTGTTAATAAGCCACAGCGAGGAGGAAGAGATGATGGATCTCCGAAGAGGGCCATGGACGGTGGATGAAGACCTCACACTCATCAATTACATTGCCACTCATGGCGAAGGTCGCTGGAATTCCCTTGCTCGTTCTGCCGGACTCAAACGAACTGGGAAGAGTTGTAGGTTGAGGTGGCTCAACTATCTTCGTCCTGATGTTCGTCGTGGTAACATCACACTTGAGGAACAACTTCTCATCCTTGAACTCCACACTCGTTGGGGAAACAGGTGGTCTAAAATTGCACAATATTTGCCTGGAAGAACTGACAACGAGATCAAGAATTATTGGAGAACTCGTGTTCAAAAACATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTTAAGGACGCCATGCGCTACCTTTGGATGCCACGGCTGGTTGAACGCATTCAAGCAGCCGCGGCCGCCTCCACCACCACAACTACAGTCGTAGCGCCAACCAACACCAGTATTAATAATAATAATAATAATGCATACACTTACAACAACAACAACCTCAATAACAATTTTGAGGTTCACAATGGGAAAATGATGCTAACTACTACTCCTCCTCCTTCGGTTATGGCCAATAATGATTTTGTGGGTTCACAAATTACCACACAAAGTTACAACACTCCGGAGAATAGTAGCACAGCAGCATCATCAGACTCGTTTGGGACTCCAATCTCGGATTTTAATGATTATTATAATAGTAACAACATTAATAATCTAGGAGATAATAATTTCTACCAAGCTTCTCAAACATTGTTCTCTCATGAACAAGGAATGGATCTTCAAAGCATGATGATGGTGGAGTCAAACACACCCTGGATGCAAAGTGGGGATACATCGGACAATTTTTGGAATGTTGAGAACATGTTGTTTTTGGAGCAACAACTCATGAATGACAACATGTGA 984 0.4319 MEVKGSSNSNNSAVLISHSEEEEMMDLRRGPWTVDEDLTLINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAASTTTTTVVAPTNTSINNNNNNAYTYNNNNLNNNFEVHNGKMMLTTTPPPSVMANNDFVGSQITTQSYNTPENSSTAASSDSFGTPISDFNDYYNSNNINNLGDNNFYQASQTLFSHEQGMDLQSMMMVESNTPWMQSGDTSDNFWNVENMLFLEQQLMNDNM 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02957 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 131 IPR017930 -
Aip01g02957 327 Gene3D - 86 149 - -
Aip01g02957 327 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Aip01g02957 327 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Aip01g02957 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Aip01g02957 327 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 322 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aip01g02957 327 CDD SANT 31 76 IPR001005 -
Aip01g02957 327 Gene3D - 26 82 - -
Aip01g02957 327 CDD SANT 102 125 IPR001005 -
Aip01g02957 327 PANTHER MYB TRANSCRIPTION FACTOR 1 322 - -
Aip01g02957 327 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Aip01g02957 327 SMART sant 81 129 IPR001005 -
Aip01g02957 327 SMART sant 28 78 IPR001005 -
Aip01g02957 327 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Aip01g02957 327 SUPERFAMILY Homeodomain-like 26 123 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02957 Aip-Chr1 131856530 131859242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02957 1 318 MYB Transcription Factor Family AT3G06490 52.339 2.82e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip01g02957 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02957 K09422 - gmx:778183 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02957 01 131856530 131859242 Aip01g02957 01 131856530 131859242 ECH