Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02925 ATGACATACCACAACTCTCGTCGGAGCCCCGCGCACTTCCGCCCTGGAGGCCGCGGCTTCCACAGCTCGCCACGTCGCTCTCCCGCTGGGCCTGGAGGTTTCCACCCAATCGGCCCCGGCGAAGGGTTCGGGCCGATGGGTGGTGACGGTTACGGAGAATACGGGTTCAACACTTACCAGGCTCCTCCTCCGCAGCTGTCTGGTCACAAGCGAGGGTTTCGTGGAGTTTCGCCAGATCGTTTTGATGGTGGAAACTTTGCCAAACTATTTGTTGGATCTGTGCCCCGAACAGCCACTGAAGAAGATATTCGACCTTTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCGCTGATCAAGGATAAAAAAACTGGGCAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTACACAATCAGCATACCCTTCCTGGAGGTGTTGGTCCTATCCAAGTACGCTATGCTGACGGGGAGCGGGAACGGCTTGGTGCAGTTGAGTACAAATTATTTGTGGGATCTCTGAACAAACAAGCTACAGTGAAGGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTCATGCGTGATGAGAAAAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCGCATAGGGATATGGCATTGGCAGCTATAAATGCACTGAATGGGATTTATACAATGAGAGGTTGTGATCAACCTCTAATTGTGCGGTTTGCTGATCCCAAGAGACCTCGTCAAGGAGATTCTAGGGGTCCTGCACTTGGTGGCCCAGGATATGGTTCTAGATTTGATGCACCAGGCCCAAGATTTCCATCAAATATTACTGATCCCATGGGTGATCGTATGCCTCCTCCTAATGCTTGGCGTCCAATGCATGCACCAAATATGGGCCCATCCCCGAATGCTGGTTTTCATGCGGTGGGGCCTCCAATGCTTCCAAGGTCTGGTGACATGGCATTGCCTACAAATCCAGGTGGTCCTATGACTGGCATGGGAGGTCCAATAGATGACCGTTTCCAAGTGCAAAATTTTCCACCATTTTCACAACAGAATTTCAACCAGCCTATGCCACAAATTCCACCAGCCAACCAGCAACAACAAATAGCACCATTGCACAAACCGACACAATCTTCTCAGGAGTTGCCTCCTTCCCACCAGTCGTACCCGCAAGGTCCAACACCCTACTTACAAACTCCACCACCTTCATCTGTACGGCATCCTGGCCAGCCACAACTTCCACTCCCTGCTGGTTCTCTACCTTCACAGCAGATACATAGCATGAGTGGGCAGTTCCCAACTTCACAACCCCAAGCTCAGCCGAGTTCTTTGGCTACTGCATTTCCCCAGGCACCTCTTGATACCAGCGGAAAATCTGGTACAACTTTGGCTACTTCAAATAAACAGCAAGTTCCCACTGGGCAGCAGCAGACAGTTCAACCTCTTCAGCAATCCCCCTCTCAGTTAGCTCAGATGCTGTCACAGCAAACTCAGACTTTACAAGCAAGCTTTCATTCCTCCCAGCAGGCCTTCTCCCAGCTCCAACAACAACTACAGATGATACAACCATCTAGTCAGGCTAATACATTGCAGCAAAATTCAGAAGCTACTAAAAATCAGTCTCAATGGGCTGGGACCATACCGCAGACCATGGTCAGCACTGCTGCAGAAATTCCTTCATCTGCATCTGCTTCTGCTTCTGCTTCTGCTGCTGTCCCAGTGGTAAGCCCAAACACAGCTATTGTGAAATGTAATTGGACAGAGCATTTATCTCCAGAGGGTTTCAAGTATTACTACAATAGTGTCACTGGTGAAAGTAGGTGGGAGAAACCAGAGGAGTTGACATTATATGAACAGCAAAAGCAACAGCAAATGATGTCTATTCAGCAGTCTCAGTCTCAGTCACAGCCTTCAGTAATATCTGCTCAGCAACTTCCTCAAGTCCAACAGGTTCAGCCTCAAGGTAATCAAGGCCGGGTTCTCCACCATCAACAAATGCAGCAGCCCCCAGTGTTCCAGGCATACGGAGTTACAGGTCACCAAGGTATTCAGGATTATAAACAGATACAGGCATCTGGAATTTCTGCTGTTGATGCTGGACGCTACTCTCAGGGTATCCAAACTTCTCAAGAGTGGATGTGGAAAAATAAGCCTGCAGGAGTTTGA 2214 0.486 MTYHNSRRSPAHFRPGGRGFHSSPRRSPAGPGGFHPIGPGEGFGPMGGDGYGEYGFNTYQAPPPQLSGHKRGFRGVSPDRFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEVFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPALGGPGYGSRFDAPGPRFPSNITDPMGDRMPPPNAWRPMHAPNMGPSPNAGFHAVGPPMLPRSGDMALPTNPGGPMTGMGGPIDDRFQVQNFPPFSQQNFNQPMPQIPPANQQQQIAPLHKPTQSSQELPPSHQSYPQGPTPYLQTPPPSSVRHPGQPQLPLPAGSLPSQQIHSMSGQFPTSQPQAQPSSLATAFPQAPLDTSGKSGTTLATSNKQQVPTGQQQTVQPLQQSPSQLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQANTLQQNSEATKNQSQWAGTIPQTMVSTAAEIPSSASASASASAAVPVVSPNTAIVKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLYEQQKQQQMMSIQQSQSQSQPSVISAQQLPQVQQVQPQGNQGRVLHHQQMQQPPVFQAYGVTGHQGIQDYKQIQASGISAVDAGRYSQGIQTSQEWMWKNKPAGV 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02925 737 MobiDBLite consensus disorder prediction 359 403 - -
Aip01g02925 737 Gene3D - 175 265 IPR012677 -
Aip01g02925 737 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 246 IPR000504 GO:0003723
Aip01g02925 737 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 152 IPR000504 GO:0003723
Aip01g02925 737 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 58 687 - -
Aip01g02925 737 MobiDBLite consensus disorder prediction 344 499 - -
Aip01g02925 737 Pfam WW domain 600 627 IPR001202 GO:0005515
Aip01g02925 737 Gene3D - 598 643 - -
Aip01g02925 737 MobiDBLite consensus disorder prediction 432 499 - -
Aip01g02925 737 ProSitePatterns WW/rsp5/WWP domain signature. 602 627 IPR001202 GO:0005515
Aip01g02925 737 SUPERFAMILY RNA-binding domain, RBD 62 172 IPR035979 GO:0003676
Aip01g02925 737 MobiDBLite consensus disorder prediction 1 46 - -
Aip01g02925 737 PANTHER TRANSFORMER-2-RELATED 58 687 - -
Aip01g02925 737 MobiDBLite consensus disorder prediction 404 425 - -
Aip01g02925 737 MobiDBLite consensus disorder prediction 635 679 - -
Aip01g02925 737 SMART ww_5 597 629 IPR001202 GO:0005515
Aip01g02925 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 168 IPR000504 GO:0003723
Aip01g02925 737 MobiDBLite consensus disorder prediction 257 293 - -
Aip01g02925 737 Gene3D - 83 174 IPR012677 -
Aip01g02925 737 CDD RRM2_FCA 179 258 IPR034645 -
Aip01g02925 737 ProSiteProfiles WW/rsp5/WWP domain profile. 596 629 IPR001202 GO:0005515
Aip01g02925 737 SUPERFAMILY RNA-binding domain, RBD 178 279 IPR035979 GO:0003676
Aip01g02925 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 258 IPR000504 GO:0003723
Aip01g02925 737 SMART rrm1_1 88 164 IPR000504 GO:0003723
Aip01g02925 737 SMART rrm1_1 179 254 IPR000504 GO:0003723
Aip01g02925 737 SUPERFAMILY WW domain 601 634 IPR036020 GO:0005515
Aip01g02925 737 CDD WW 599 629 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02925 Aip-Chr1 131306028 131315807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02925 89 297 Eukaryotic Initiation Factors Gene Family AT2G23350 24.651 2.23e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02925 - - gmx:100798390 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02925 01 131306028 131315807 Aip01g02925 01 131306028 131315807 ECH