Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip01g02918 | ATGGATCCAGGGAATCCCGCTTCAACGCCGGAACCTGAATCACCGACCTCTCCCTCCGCCGGTTTCAACACCGACCAGCTTCCACACACCAGCCATGTTTCCGAAGACGATGAGGCTTCCGTCGATCCCGACATCATTCACGATGAGCCTGAAGACGAAAACCCGGAAGAGGACGAAGATGGAGAGGATCTATACAACGACAACTACATGGATGATTATCGGAGGTTGGATGACCATGATCAGTTTGAATCGGCTGGGCTGGATGATTCAGTGGAGGATGTTAGGGATTTCGATCAGATAATGGAAGATCGAAGGGCTGCGGAGGTGGAACTAGATGCTCGTGATGGTCGCCTTAACAATCGCAAGTTCCCTCAGCTTCTCCATGACCAAGATACTGATGATGACAGTTACAGGCCCTCCAAAAGGGCTCGAGCTGATGCCAGGGCTCCTAATCTGAGCGATGATGATTTCGATGGGTTGCATAGTTCACCTGGAAGGTCACAGCCAGGACACTCTAGAGATGATGTTCCGAGGACTGATCAAACTGAGGATGATCAATATGATGATGACTTTGATGAGGAAGGTGGTTATGAGATGTACCGTGTTCAAGGAACACTTAGAGAATGGGTTACAAGAGATGAAGTCCGCCGCTTCATAGCTAGAAAATTCAAGGATTTCTTGCTCACGTATGTTAATCCTAAAAATGAACACGGTGACTTTGAATATGTGCGGCTGATAAATGAGATGGTGTTAGCCAATAAGTGTAGTTTGGAGATAGATTACAAACAATTTATCTACGTCCATCCCAACATTGCCATTTGGCTGGCTGATGCACCTCAGTCTGTCTTAGAAGTAATGGAAGATGTTGCTAAAAATGTTGTCTTTCAATTGCATCCAAATTACAAAAATATACAACAAAAGATTTATGTTCGTATAACAAACTTACCAGTTTATGACCAGATTCGGAATATAAGACAAATTCACTTGAATACAATGATTCGAATTGGGGGAGTTGTAACTAGACGTTCAGGAGTCTTTCCCCAGTTGCAACAGGTGAAGTATGACTGTAATAAATGTGGGGCAACTTTGGGACCTTTTTTCCAGAATTCCTACTCAGAGGTGAGAGTTGGATCCTGTCCTGAGTGTCAATCAAAAGGGCCATTTACTGTCAACATTGAGCAGACAATTTACAGGAATTTTCAAAAGCTCACTCTCCAAGAGAGCCCAGGAATTGTTCCTGCAGGTCGTTTACCAAGATACAAGGAAGTTATACTATTGAACGATCTGATTGACTGTGCCCGTCCTGGGGAAGAGATTGAGGTCACAGGTATCTATACTAATAACTTCGATTTGTCGCTAAACACAAAGAATGGTTTTCCTGTGTTTGCCACTGTTGTCGAAGCAAATTATGTCACAAAGAAGCACGATCTGTTCTCTGCTTACAAACTTACTCAGGAAGACAAAGAAGAGATTGAGAATTTGAGCAAAGATCCAAGAATAGGAGAAAGGATTATCAAGTCTATTGCTCCATCAATCTATGGTCATGAAGACATCAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAAAATGTTCAAGGAAAGCACAGACTGAGAGGAGATATTAATGTTCTACTTCTTGGTGATCCAGGAACAGCGAAGTCACAATTTCTCAAGTACGTTGAGAAAACTGGGCAACGAGCTGTATACACCACTGGCAAGGGGGCGTCTGCTGTGGGTCTCACTGCAGCAGTTCACAAGGATCCTGTCACAAGGGAGTGGACCTTGGAAGGGGGAGCCCTTGTCCTAGCTGACAAAGGGATCTGCCTTATCGATGAGTTTGACAAGATGAATGACCAAGACAGGGTAAGTATCCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCGGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTCATTGCTGCTGCCAATCCTATTGGAGGAAGATATGATTCCTCCAAAACATTTTCTCAAAATGTTGAATTGACAGACCCTATTATTTCCCGTTTTGACATCCTCTGTGTTGTGAAGGATGTGGTTGATCCGGTCACTGATGAAATGCTTGCAAAGTTTGTAGTGGACAGTCACTTTAGGTCACAACCAAAGGGTGGTAACAGAGACGAAAAGTCGGTGACTGAGTCCCAAGATGATTATGCATCTGCCATGCCTGTTGATCCTGAGATACTTCCACAAGAGTTGCTAAAGAAGTATATTACTTATGCTAAATTAAATGTATTTCCAAGACTACATGATGCTGATTTGGATAAGTTGACACATGTTTATGCCGAACTGCGGAAAGAATCCTCGCATGGTCAAGGGGTCCCTATTGCTGTAAGGCATATTGAGTCAATGATAAGGATGTCCGAAGCTCATGCGAGGATGCATCTCAGGCACCATGTCACACAAGAGGATGTGGACATGGCAATTCGAGTCCTACTTGATTCATTCATTTCAACCCAGAAATTTGGAGTGCAGAAAGCTCTTCAAAAGAGCTTTAGAAAATATATGACTTTCAAGAAGGACTACAATGAATTGCTGCTTTACCTTCTCCGCGAGCTTGTCAAGAATGCTTTGCGTTTTGAAGAAATCGTTGCTGGATCTACTTCAGGTCTTGAACATATAGATGTCAAAGTGGAAGATCTCCACAATAAGGCTCAAGAGCACGAAATATATGATCTTAAACCATTCTTCAACAGTAGTCACTTTTCAAGGGCCAATTTTGTATTGGATGAAGAGCGCGGAATAATCAGACATCGCCTTGCTAATTGA | 2811 | 0.4312 | MDPGNPASTPEPESPTSPSAGFNTDQLPHTSHVSEDDEASVDPDIIHDEPEDENPEEDEDGEDLYNDNYMDDYRRLDDHDQFESAGLDDSVEDVRDFDQIMEDRRAAEVELDARDGRLNNRKFPQLLHDQDTDDDSYRPSKRARADARAPNLSDDDFDGLHSSPGRSQPGHSRDDVPRTDQTEDDQYDDDFDEEGGYEMYRVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGDFEYVRLINEMVLANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVAKNVVFQLHPNYKNIQQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGATLGPFFQNSYSEVRVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKHDLFSAYKLTQEDKEEIENLSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVQGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHFRSQPKGGNRDEKSVTESQDDYASAMPVDPEILPQELLKKYITYAKLNVFPRLHDADLDKLTHVYAELRKESSHGQGVPIAVRHIESMIRMSEAHARMHLRHHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALRFEEIVAGSTSGLEHIDVKVEDLHNKAQEHEIYDLKPFFNSSHFSRANFVLDEERGIIRHRLAN | 936 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip01g02918 | 936 | Gene3D | - | 480 | 853 | IPR027417 | - | |
| Aip01g02918 | 936 | SMART | mcm | 317 | 831 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip01g02918 | 936 | Pfam | MCM OB domain | 320 | 447 | IPR033762 | - | |
| Aip01g02918 | 936 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 510 | 833 | IPR027417 | - | |
| Aip01g02918 | 936 | Pfam | MCM AAA-lid domain | 746 | 830 | IPR041562 | - | |
| Aip01g02918 | 936 | CDD | MCM2 | 503 | 829 | - | - | |
| Aip01g02918 | 936 | MobiDBLite | consensus disorder prediction | 109 | 161 | - | - | |
| Aip01g02918 | 936 | Gene3D | - | 321 | 446 | IPR012340 | - | |
| Aip01g02918 | 936 | Gene3D | - | 348 | 398 | - | - | |
| Aip01g02918 | 936 | MobiDBLite | consensus disorder prediction | 41 | 66 | - | - | |
| Aip01g02918 | 936 | SUPERFAMILY | Nucleic acid-binding proteins | 222 | 469 | IPR012340 | - | |
| Aip01g02918 | 936 | MobiDBLite | consensus disorder prediction | 67 | 94 | - | - | |
| Aip01g02918 | 936 | MobiDBLite | consensus disorder prediction | 14 | 29 | - | - | |
| Aip01g02918 | 936 | MobiDBLite | consensus disorder prediction | 1 | 94 | - | - | |
| Aip01g02918 | 936 | Pfam | MCM P-loop domain | 488 | 710 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip01g02918 | 936 | ProSitePatterns | MCM family signature. | 609 | 617 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Aip01g02918 | 936 | Gene3D | - | 213 | 317 | - | - | |
| Aip01g02918 | 936 | MobiDBLite | consensus disorder prediction | 714 | 728 | - | - | |
| Aip01g02918 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 330 | 347 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aip01g02918 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 353 | 365 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aip01g02918 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 388 | 402 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aip01g02918 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 449 | 460 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aip01g02918 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 464 | 475 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aip01g02918 | 936 | ProSiteProfiles | MCM family domain profile. | 500 | 706 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip01g02918 | 936 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 137 | 930 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip01g02918 | 936 | Pfam | Mini-chromosome maintenance protein 2 | 36 | 192 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aip01g02918 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 541 | 556 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip01g02918 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 601 | 615 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip01g02918 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 629 | 642 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip01g02918 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 653 | 665 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip01g02918 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 680 | 688 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip01g02918 | 936 | PANTHER | DNA HELICASE | 137 | 930 | - | - | |
| Aip01g02918 | 936 | MobiDBLite | consensus disorder prediction | 713 | 733 | - | - | |
| Aip01g02918 | 936 | Pfam | MCM N-terminal domain | 221 | 314 | IPR027925 | - | |
| Aip01g02918 | 936 | MobiDBLite | consensus disorder prediction | 109 | 194 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip01g02918 | Aip-Chr1 | 131160861 | 131166213 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip01g02918 | 21 | 931 | Core DNA Replication Machinery Family | AT1G44900 | 76.797 | 0.0 | 1386 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip01g02918 | K02540 | - | gmx:100799441 | 1595.48 |