Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02913 ATGTCCATAAACGAGGATGATGTGAAGAATGATTCTGATAATGATTTGGGTGATGATTACGATTATCAACCGATTGCAGAAGATGCTGCTGAAGACGACGATGTGGATTCATTGGATTCTACTAGCAAGAGTGAAGAAATTTGTGGTGTAAAAAGAATAGCAGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACAGAGGATGAGGCCTGCCAATTTTATAACGCATATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTACAATCATTAGTAGGCAACTTGTTTGCAATAAAGAAGGCTGGAGGAATATGAGGTATCTTGATCTGGATGATAGATCAAGGGAGGCAAAGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTATGGCTGCGGTAGATGGAAGGTATCATTTTTTGTGGAATCTCACAACCATGATCTGACGCCACCGCAATTTGCGCATCTAGTTCCGGCCAATCGTCGTCTCACTGTCATTGATAAAATCCAAGTGGAAAATCTTCATAATTTTGGTGTCAAGACCTGCCATATTATGGGGTATATTGCGTTCCAGAAGGGTGGATATCGTCATGCTGGCTTCATACGCAAAGATTTGTACAATCACATTGATCGTTATCGTCGGTCAAAGGTTAAAAACGGGGATGCCAATGCGGCAATAAACTATTTGATTGGCAAGTCAAACAATGATCCGCTGTTCTTTGGAAAGTATATGTTCACTAGTGACGAAAGGCTCGAGCATATTTTTTGGGCAGATGGGCAGTCAATTATCGACTATCACTGCTTTGGAGATATTGTTGCTTTTGATTCAACCTACAAGAAGAATAAATACAACAAGCCTTTGGTTATTTTCTCCGGATGCAATCATCACGGGCAGACTGTTATCTTCGGCTCCGGCCTACTATCCGACGAAACCACAGAGACGTATAAGTGGTTGTTGGAAATCTTTGTTGAAGCGATGGGTGGAAAAAGTCCTAAAGCAGTAATAACTGACGGAGACCTTGCCATGCGAGATGCAATCAAGAATGTTCTTCCTGATGCGACCCATCGGTTATGTGGATGGCATCTGCAGAGAAATGCATGTGAAAATATAAAGAATCCTAATTTCCTGTGTGATTTTAAGGGTCTTATATGCGACAACAACGACCACAGAGACTTTGATCGGAGATGGGCAGCCATTTTAGATAAGCACAACCTTGTTGGGAGTACCTGGATGGAAAAGACGTACGAAACTCGTTCGATGTGGTCCCATTGTTTCCTCCGGGATAAGTTTTTCGGTTACATAAGGACGACATCACAATGCGAAGGTATAAATTCTCTCATAAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAACGAATTAATCGCTGACTTTAAGTCTCAGTGCTCAGAGCCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACTCGAAACATTTTTAAGAAAATTCGTAATGAGATTCAGAGGGTAGGGGTTTTGAATATCAAGGTACTAAGCACAACCTTGGACAAGGTCAAGTTCAGTGTGACTGCTCTCGGAGACCTGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTTCCTATAGTCATGTCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATCTATAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACGTCGAAAGGTCACGCAAACAAGGCAACTCAACTCCTAATGTTAACATGGAAGGCATCAACGATCTCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGTGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGTTGTCCAGATCTGATGCAGCATATTGTGGAAGGTAACTCTCGCGATCGATCAGACGGCAATGCATCAGCCAAGGACTCAAGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAGTTAAGTCCGAACACCACTTAGGACCTAAGACCAGGCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACGAGTATGAGGAACCGAAAGGGTAAAGACAACACTTTTGATGAGGTGAAGGAGTCACAGCAGGACAAGGGACATTCATTCACAAACTATGAATGCGTTAATGATGTCATGGATGAGAAATGTGACACACCACATGTGCAGATCGATGTCCGAGATCCGTTACCATCGTCAATGCCTTGTGGCAACAAACAAGGATCGTACATGGCATTGTTCGCGTCGATGCATAGGACACTTTGA 2487 0.4274 MSINEDDVKNDSDNDLGDDYDYQPIAEDAAEDDDVDSLDSTSKSEEICGVKRIADLMVEDIWNLEFRTEDEACQFYNAYSCWHGFVMRKDDVVRDNQGTIISRQLVCNKEGWRNMRYLDLDDRSREAKSLTRTKCPARLRVKLDYGCGRWKVSFFVESHNHDLTPPQFAHLVPANRRLTVIDKIQVENLHNFGVKTCHIMGYIAFQKGGYRHAGFIRKDLYNHIDRYRRSKVKNGDANAAINYLIGKSNNDPLFFGKYMFTSDERLEHIFWADGQSIIDYHCFGDIVAFDSTYKKNKYNKPLVIFSGCNHHGQTVIFGSGLLSDETTETYKWLLEIFVEAMGGKSPKAVITDGDLAMRDAIKNVLPDATHRLCGWHLQRNACENIKNPNFLCDFKGLICDNNDHRDFDRRWAAILDKHNLVGSTWMEKTYETRSMWSHCFLRDKFFGYIRTTSQCEGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELIADFKSQCSEPVMITSLEVYERSASCYFTRNIFKKIRNEIQRVGVLNIKVLSTTLDKVKFSVTALGDLAKDRRVEVDRGKNLFSCSCKLFESRGISYSHVFCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMPVNDDVERSRKQGNSTPNVNMEGINDLFVVKSKGAPSKRSSWRKKSACSNCHKYGHYYKRCPDLMQHIVEGNSRDRSDGNASAKDSSFSPERFANSSRSFSVKSEHHLGPKTRPFKKGGTRKFTATSMRNRKGKDNTFDEVKESQQDKGHSFTNYECVNDVMDEKCDTPHVQIDVRDPLPSSMPCGNKQGSYMALFASMHRTL 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02913 828 MobiDBLite consensus disorder prediction 697 746 - -
Aip01g02913 828 Pfam MULE transposase domain 286 380 IPR018289 -
Aip01g02913 828 MobiDBLite consensus disorder prediction 1 41 - -
Aip01g02913 828 MobiDBLite consensus disorder prediction 11 35 - -
Aip01g02913 828 MobiDBLite consensus disorder prediction 707 728 - -
Aip01g02913 828 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 637 IPR031052 GO:0006355
Aip01g02913 828 SUPERFAMILY Retrovirus zinc finger-like domains 659 692 IPR036875 GO:0003676|GO:0008270
Aip01g02913 828 SMART 26again6 574 601 IPR006564 GO:0008270
Aip01g02913 828 Pfam FAR1 DNA-binding domain 74 164 IPR004330 -
Aip01g02913 828 ProSiteProfiles Zinc finger CCHC-type profile. 673 688 IPR001878 GO:0003676|GO:0008270
Aip01g02913 828 PANTHER OS02G0262500 PROTEIN 60 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02913 Aip-Chr1 131066538 131069540 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip01g02913 MULE 2.8e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02913 - - ahf:112755379 1523.45