Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02906 ATGTGTGATAGAGCTCTCCACTCTCCACTCTCCTTAGTCATAGCCCAAGACCCCTCCACTCTTCGCCGGCGGAGCGACACAACAACAGTGGCATCCCGTTCAGCCCTCGCGACACAGCAACAGTGGCAGTGCGGTCGCCTTCTCGCCTTCCTCCGTTCCGTAGCCGCCGCCTCCGTTGCCTTCCTCCGTAGCCACCGTTTCCTTCCACCGTTCGCAGCGCCGTCGCCTTCTGTGCAGTTCCAGAGTCGAAACAGTTTAAAAAACCGAAAACCAAACCAAAGTGCACCGCAAACACCTCTAGTTTCGGTAGCAACAACCCAAATTCAGGGCCTTTCACTACCCAATAATAGGAGCAAACATTGCAATCTTTATTCATCTTCTTCTTCATCTTCAAGAAGTATAGCAGCAACAGCAACACTATACCCTTCCACCACACAGAAGAACCGCCACTGGATGGTACTCATGGAGCCTCCACCTCACGGTGTCACTTCCAAGTCACAACTCATCGATTATTACGCCAGCACTCTCCACAAAGTCCTTGCTAGTGAGAGAGATGCTCAAATGTGTATATATGATGCTTCCTACGATACACACTTTGGTTTCTGTTGTGACATTGATCCACAAATAACCTCCCAACTCACAAGTTTACCGGGGGTCTTGTTAGTTAGGCCTGATCCGGATTTCAGTTCTTCGGAAAAGGACTATAGTCTATCAAGTGGTCAAGAAGGTCTGCTATCGAATTCAAAACTACAATTTGAAACCAACATGTTATTCTTTCTTGAGAATTCAAAGCATTGGCTTGTTAGAATTGATAAACCTGCTGTTGGGATTGTTACAAAGGCTCAGATGGTCGATTATTTTGTTCAAATATTGACCAAGGTCATGGGAAACGAGAAGGATGCTCAGATGTGCATATATCATGTTTCTTGGAAAAAAATATTTGGTTTTTGCTGTGAACTTGATGACGACTGTGCACAGGAGTTAGCTGGTGTGCCTGGTATCTTATCAGTTCAACCAGATAATAATTTTGAGTCAGAAAATAAGGATTATGAAGGTAATAACTTGGAAAACAGTTTGAGTGTGCAAAAATCTTTTGAAGCAAGTCAGGCAGCTCCCCTGCGAACGAAAAAGCTTTTTGTGACAGGACTATCGTTTTATACATCTGAGAAAACCTTACGCGCAGCATTTGAAGGCTTTGGTGATCTTGTTGAAGTCAAAATCATTATGGATAAAATTTCCAAAAGGTCCAAGGGTTATGCATTTGTTGAGTACACCACAGAGGAGGCTGCAAGCGCAGCATTGAAAGAGATGAATGGCAAGATTATTAATGGATGGATGATAGTAGTGGATGTTGCCAAGACTAACCCACCAAGGCACAACAGGGTCATGTCAGGCCATCAGTTTCACAAGCCAAAAGCCTTTTAA 1425 0.4442 MCDRALHSPLSLVIAQDPSTLRRRSDTTTVASRSALATQQQWQCGRLLAFLRSVAAASVAFLRSHRFLPPFAAPSPSVQFQSRNSLKNRKPNQSAPQTPLVSVATTQIQGLSLPNNRSKHCNLYSSSSSSSRSIAATATLYPSTTQKNRHWMVLMEPPPHGVTSKSQLIDYYASTLHKVLASERDAQMCIYDASYDTHFGFCCDIDPQITSQLTSLPGVLLVRPDPDFSSSEKDYSLSSGQEGLLSNSKLQFETNMLFFLENSKHWLVRIDKPAVGIVTKAQMVDYFVQILTKVMGNEKDAQMCIYHVSWKKIFGFCCELDDDCAQELAGVPGILSVQPDNNFESENKDYEGNNLENSLSVQKSFEASQAAPLRTKKLFVTGLSFYTSEKTLRAAFEGFGDLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKTNPPRHNRVMSGHQFHKPKAF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02906 474 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 99 464 - -
Aip01g02906 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 378 444 IPR000504 GO:0003723
Aip01g02906 474 Gene3D - 345 472 IPR012677 -
Aip01g02906 474 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 99 464 IPR039206 GO:0016554
Aip01g02906 474 SMART rrm1_1 377 450 IPR000504 GO:0003723
Aip01g02906 474 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 260 344 IPR037045 -
Aip01g02906 474 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 115 229 IPR037045 -
Aip01g02906 474 SUPERFAMILY RNA-binding domain, RBD 369 462 IPR035979 GO:0003676
Aip01g02906 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 376 454 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02906 Aip-Chr1 131004305 131005831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02906 376 458 C2H2 Transcription Factor Family AT2G19380 33.735 2.58e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02906 - - gmx:100791652 516.538