Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02896 ATGGCGTTTTGGTGGCCATTGCTTGTCTTAGCATTCGCTTACGGACTCTGCAGGTTCCTTTTCATGCTTATTCCTCCCAAGGTTCCTTCCATCGATGTTGAAGCTTCCGACGTGTTGGATGATGGAAACCAAGCGCAGGAGAATAGCTTCATATATGTTCCTCCGAGAGGAACGTCACAGCAATCTGGAAAGATAGTTCAGTGCTATGAGCCTGCGACTATGAAATATTTAGGATATGTTCCTGCATTGACGCGTGATGAGGTAAAGGATCGTGTGGCAAAAGTAAGAAAGGCTCAAAAAATGTGGGCAAAGACCAGCTTCAAGCAAAGACGCACGTTTTTGCGTATACTGTTGAAATATATAATCAAACATCAAGCGCTCATATGCGAAATATCTTCGCGTGATACTGGAAAGACCATGGTAGATGCCTCTTTAGGAGAAATAATGACAACTTGTGAAAAGATCAATTGGCTACTGTCAGAAGGCGAACAGTGGCTAAAGCCTGAATACCGGTCTTCTGGAAGATCAATGCTTCACAAGAGAGCAAAAGTAGAATTCCACCCCCTTGGTGTTATTGGTGCCATCGTTTCATGGAATTATCCTTTCCACAATATTTTTAATCCAATGCTGACAGCTGTTTTTTCTGGAAATGGCATTGTGATTAAGATATCAGAACATGCAAGTTGGTCTGGATGCTTTTACTTCCGGATAATCCAATCTGCCCTTGCTGCAATAGGAGCGCCTGAGGACCTTGTTGAGGTCATAACAGGATTTGCTGAAACTGGAGAAGCGTTGGTATCTTCTGTTGATAAAGTCATATTTGTTGGATCACCTGGTGTGGGGAAGATGATAATGAGAAATGCTGCTGAGACACTTATTCCAGTTACTCTAGAGCTTGGTGGCAAAGATGTATTTATTGTTTGTGATGACGTAGATGTGGACCATGTTGCGCAAATTGCTGTCAGGGCTGTTCTTCAGTCAAGTGGACAGAACTGTGCTGGGGCTGAGAGATTTTATGTCCACAGGGAGATTTATTCTTCTTTTGTCAGTAAAGTTACCAAAATCATAAAATCAGTTAGAGCTGGCCCACCACTTGCTGGAAAGTATGATATGGGAGCTTTATGCATGCATGAGCATTCTGAAAAGCTCGAGGGCCTTATCAATGATGCTTTAGACAAAGGAGCCGAGATTGTTGCTCGTGGAAGTTTTGGACATATAGGTGAAGATGCTGTTGATCAATATTTTCCCCCTACTGTGATTGTGAATGTGAACCACTCAATGAGACTGATGCAAGAAGAGGCATTTGGACCAATCATGCCAATAATGAAATTTAGCTCTGACGAGGAGGTTGTCAAGCTCGCAAATGACTCAAAATATGGGCTTGGCTGCGCTGTTTTCTCAGGTTCTCAGGACCGTGCTAGAGATATAGCTTCACAAATACATTGTGGGGTTGCTGCCGTTAATGACTTTGCAGCAACGTACATGTGTCAGTCCCTGCCATTCGGGGGCGTAAAACATAGTGGATTTGGACGATTCGGTGGTGTAGAAGGTTTGCGAGCCTGCTGTCTTGTCAAGGCAGTTGTCGAAGATAGATGGTGGCCATTTGTCAAAACCAAGATACCTAAACCTATTCAGGTCAGTCCTGAAATCCTTTCACCATAA 1662 0.4344 MAFWWPLLVLAFAYGLCRFLFMLIPPKVPSIDVEASDVLDDGNQAQENSFIYVPPRGTSQQSGKIVQCYEPATMKYLGYVPALTRDEVKDRVAKVRKAQKMWAKTSFKQRRTFLRILLKYIIKHQALICEISSRDTGKTMVDASLGEIMTTCEKINWLLSEGEQWLKPEYRSSGRSMLHKRAKVEFHPLGVIGAIVSWNYPFHNIFNPMLTAVFSGNGIVIKISEHASWSGCFYFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSVDKVIFVGSPGVGKMIMRNAAETLIPVTLELGGKDVFIVCDDVDVDHVAQIAVRAVLQSSGQNCAGAERFYVHREIYSSFVSKVTKIIKSVRAGPPLAGKYDMGALCMHEHSEKLEGLINDALDKGAEIVARGSFGHIGEDAVDQYFPPTVIVNVNHSMRLMQEEAFGPIMPIMKFSSDEEVVKLANDSKYGLGCAVFSGSQDRARDIASQIHCGVAAVNDFAATYMCQSLPFGGVKHSGFGRFGGVEGLRACCLVKAVVEDRWWPFVKTKIPKPIQVSPEILSP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02896 553 Pfam Aldehyde dehydrogenase family 60 527 IPR015590 GO:0016491
Aip01g02896 553 PANTHER ALDEHYDE DEHYDROGENASE-LIKE PROTEIN YHR039C-RELATED 1 544 - -
Aip01g02896 553 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 325 336 IPR016160 GO:0016491
Aip01g02896 553 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491
Aip01g02896 553 PIRSF ALDH 71 549 IPR012394 GO:0006081
Aip01g02896 553 CDD ALDH_F15-22 69 531 - -
Aip01g02896 553 SUPERFAMILY ALDH-like 60 529 IPR016161 GO:0016491
Aip01g02896 553 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 544 - -
Aip01g02896 553 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 66 525 IPR016162 GO:0016491
Aip01g02896 553 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02896 Aip-Chr1 130893413 130898727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02896 1 545 Aldehyde Dehydrogenase Gene Family AT3G66658 80.183 0.0 954
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02896 - - gmx:100806954 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02896 01 130893413 130898727 Aip01g02896 01 130893413 130898727 ECH