Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02872 ATGGGAAGAGCTCCATGCTGTGAGAAAGTGGGGTTGAAGAGAGGAAGATGGACAGCTGAAGAAGATAGGATATTGACTCAATACATAGAAGAACATGGGGAGGGTTCATGGAGGTCGTTGCCCAAGAATGCTGGACTCTTAAGGTGTGGTAAGAGTTGCAGACTCAGATGGATAAACTACCTCAGATCAGATGTCAAGAGAGGCAACATCACTCCCCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCAGTGATAGCAGGGCATTTACCAGGAAGAACAGACAATGAGATAAAGAACTATTGGAACTCTCATCTCAGGAGGAAAATTTATTGCTTCATGAAATCTTTGAATGATTATTCCTCCTTCCCTCCCACCATTGACATTGCTGCATTAAAAGCTTCCAAGAGAAGAGCACCTACTCGATCTACTGCACCTAATAAGAACTTAGAATTAAGGGACACAAAAGAGGTGATAATGCTTCAACAAGTACAACAAAGCATTCAAAAGAATAATGGTGATCATGATGATCATGAAGCTTTTAATGATGAGGAGTTGGGAGCATATGAATGGTTAGATGATGAAATTATGAAACTTAGTTACATGTTTGAGGGTGGTATGCTTGTAAACTATGGTGATAATAATAATGAAAATGATGAAGAGGAGAACAAGAGTGTTAGTGATTGGAACACTACTAGTGCTACTACACCTCCAAGTTCTTCTTCTTGTTCTTCTTCTTCTGTGAGTTCTGTGTATGATTGGCATCATCATCATCATCATGATATCCATTTGGCAAGTGGCAGTGTTCAATCCTATAATAATAATCAATGGGACCTTTTTGAACAAGATCAGATCCCTACTACCTTATGGGGTAGGTAA 897 0.3969 MGRAPCCEKVGLKRGRWTAEEDRILTQYIEEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNDYSSFPPTIDIAALKASKRRAPTRSTAPNKNLELRDTKEVIMLQQVQQSIQKNNGDHDDHEAFNDEELGAYEWLDDEIMKLSYMFEGGMLVNYGDNNNENDEEENKSVSDWNTTSATTPPSSSSCSSSSVSSVYDWHHHHHHDIHLASGSVQSYNNNQWDLFEQDQIPTTLWGR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02872 298 Gene3D - 14 66 - -
Aip01g02872 298 CDD SANT 16 61 IPR001005 -
Aip01g02872 298 MobiDBLite consensus disorder prediction 219 253 - -
Aip01g02872 298 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip01g02872 298 MobiDBLite consensus disorder prediction 233 253 - -
Aip01g02872 298 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 270 - -
Aip01g02872 298 Gene3D - 71 116 - -
Aip01g02872 298 PANTHER MYB TRANSCRIPTION FACTOR 2 270 - -
Aip01g02872 298 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip01g02872 298 CDD SANT 71 112 IPR001005 -
Aip01g02872 298 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip01g02872 298 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aip01g02872 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip01g02872 298 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip01g02872 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip01g02872 298 SMART sant 66 114 IPR001005 -
Aip01g02872 298 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02872 Aip-Chr1 130665807 130667368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02872 1 205 MYB Transcription Factor Family AT5G49330 56.744 3.06e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip01g02872 Myb_DNA-binding 5.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02872 K09422 - gmx:100795019 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02872 01 130665807 130667368 Aip01g02872 01 130665807 130667368 ECH