Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02870 ATGGTGGATTCAACTGGAAAAGGATCGGACTCCGATGATGCAAGCCCTAACTCCGCCGCCGCAGGTAAAAGTCCAACAACCGAGCAGAAGAAGACGTGCGCCGACTGCGGTACCTCCAAGACTCCTCTCTGGAGAGGTGGCCCCGCCGGCCCCAAGTCTCTATGCAATGCCTGCGGGATCAGGAGCCGCAAGAAGAAAAGAGCCATTCTCGGAATCACAAGAGGAACCACCACCGACGATGTTAAAAAGGGGAAAAGAAGCAACACCGTCGCCAATAGTAATAATAACAAGTTTGGGGATAGCTTTAGTTTCAAGAAGAGGTGGATCACAATGGCGAGGCAGAGATCGAATCCCGCGCACAGCCACAGGGACAAGTTGGGAGAGGAAGAACAAGCTGCTTTCCTGCTCATGTCTCTCTCTTATGGATCCGTTTATGCCTAA 441 0.5215 MVDSTGKGSDSDDASPNSAAAGKSPTTEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGITRGTTTDDVKKGKRSNTVANSNNNKFGDSFSFKKRWITMARQRSNPAHSHRDKLGEEEQAAFLLMSLSYGSVYA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02870 146 SMART GATA_3 27 87 IPR000679 GO:0006355|GO:0043565
Aip01g02870 146 PANTHER OS01G0976800 PROTEIN 1 146 - -
Aip01g02870 146 MobiDBLite consensus disorder prediction 1 36 - -
Aip01g02870 146 MobiDBLite consensus disorder prediction 1 47 - -
Aip01g02870 146 Pfam GATA zinc finger 33 67 IPR000679 GO:0006355|GO:0043565
Aip01g02870 146 ProSiteProfiles GATA-type zinc finger domain profile. 27 63 IPR000679 GO:0006355|GO:0043565
Aip01g02870 146 Gene3D - 27 98 IPR013088 GO:0006355|GO:0008270
Aip01g02870 146 ProSitePatterns GATA-type zinc finger domain. 33 58 IPR000679 GO:0006355|GO:0043565
Aip01g02870 146 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 26 67 - -
Aip01g02870 146 CDD ZnF_GATA 32 89 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02870 Aip-Chr1 130643836 130645012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02870 24 146 C2C2-Gata Transcription Factor Family AT5G49300 55.285 4.25e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip01g02870 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02870 - - aprc:113847917 181.8