Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02857 ATGGCTTCAACGGACATCAGAGACATTCTCACAGCTTTTAGTCCTTCTTTGGACTACTTCGCCATCAGCACCGGCGATGGCCGCGTTAAGATATGGGATACATTGAAGGGTCAGGTACAGACTGAGTTTGCAGATATGACATCAAATGACACAAGAAGTATATATGATAGATCCACGAATGGACATCTCTCAATAGACTATACGTGCATGAAGTGGTTGTCGTTGGAAAGAAAGAAAAAAAGAAAGCATGCATCCTCATTGTTAGTGCTTGGGACTGGTGGTGGTGATGTTTTAGCATTTGACGTGTCTGCTGGTCAATTGAATTGGAGAATTAGCAACTGTCATCCAGGAGGTGTGAGAGCCATTTCATCGTCAGCAAATGGATCATGTATCTATACTGCAGGGGCAGATGGGATGATATGTAGAATTGATTCCGTCACGGGAAACCTGTTGGAGAAATTTAAAGCTTCTACAAAGGCTGTATCCTGTATGACTATTTCCTCAGATGGGAAGACTTTAGCTACTGCAGCATCACAATTGAAGATCTTTAACAGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGATCTGTTAGATGCTTGGTCTTCACTGAAGATGGCAAGTATATCCTTTCATCTGCCGTTGGTGAAAGATATGTTGCTCTGTGGAGGATAGATGGTGCCAGAAAACAGTCAGTTAGTTGTGTTCTTGCAATGGACCATCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAGCGGGGAACATGATGAGAACGGCATATGTGTTTTGGCCATCTCAGAAGTTGGTGTTTGTTATTTCTGGTTTGGAAATAGTATTGAAGAACTACGTAATGCCAAACCCACAAAAATATCATTATCTTCGGAAGATATATTCTCAAGAAAATACAAGGGTGCATTGCCAACAATATATGCTGCAAAGTTACAAGGCATACAGAAGCCTGCATCTGGGCATGTTTTTCTTGTTTCTGGGTTGCTTGTAAAACCATCATTTCAAAAACTTTTAGTGCATTCTGGTACAGATGTACAGTTGAATGTCTCCCATGATGGTATTCTTCTTCCAATGAGTCAATCTCTTGTTAAATCTAAGAAGCGGTCAGATGAACGAAGAGTAACTGCACTAGACCGTGCTAATGCAGAAGATGCCTTGCTTCCGATTCCTAAGGTTTTTTATTCTTCTGAGAAAGAGAAAGCATTCCAAGACTCTTCAGACAGAAATGCAACAGATGGTTTGTTTAGAATTAATAAAGCTGATTCTATCAAGAAACAAGTTTGTATGGAGGACCAGCTGAGATCACTAGGGATACTTAAAAGTGAAAAAGAGTGTTCATCAAACCTTGAAAAATACTATCCATTATTGAAGGGTATTAATCTTGAAGCTGTTACTCCAACGAAAAAGATTAGAGCAACTGTTTTGTCAATGGAGCCAAGTGAAGCAGTCAAGCTACTTGAACCGTTACTGGCTGCTTGGCAGTCAAGGTCATCTAGTGGAAAGTATGTTCTTCCCTGGATATATAACATATTAGTAAATCATGGTCGCAATTTCACTGCTGAAGAATTTGCAACATGTATGCTTGATTCCTTGTATAAGATTACCAATTCTAGAGGGCCTACGTTTCAGTCTTTATTACAATTATCAGGTCGCCTGCAACTAATGACATCACAGATTGACAAGGCATCTCAGACCGTAAGTCATCCAGTACATGATCTCCAAATGGATGAAAGTGGAGACGAGGATGAAGAGGATGAATATTTTCATGATGAAGGAGATGATGACTCTGAAATAAGCAGTGATGATGAAAGCTAG 1836 0.4003 MASTDIRDILTAFSPSLDYFAISTGDGRVKIWDTLKGQVQTEFADMTSNDTRSIYDRSTNGHLSIDYTCMKWLSLERKKKRKHASSLLVLGTGGGDVLAFDVSAGQLNWRISNCHPGGVRAISSSANGSCIYTAGADGMICRIDSVTGNLLEKFKASTKAVSCMTISSDGKTLATAASQLKIFNSSNHKKIQKFSGHPGSVRCLVFTEDGKYILSSAVGERYVALWRIDGARKQSVSCVLAMDHPAVFLDSRCIDSGEHDENGICVLAISEVGVCYFWFGNSIEELRNAKPTKISLSSEDIFSRKYKGALPTIYAAKLQGIQKPASGHVFLVSGLLVKPSFQKLLVHSGTDVQLNVSHDGILLPMSQSLVKSKKRSDERRVTALDRANAEDALLPIPKVFYSSEKEKAFQDSSDRNATDGLFRINKADSIKKQVCMEDQLRSLGILKSEKECSSNLEKYYPLLKGINLEAVTPTKKIRATVLSMEPSEAVKLLEPLLAAWQSRSSSGKYVLPWIYNILVNHGRNFTAEEFATCMLDSLYKITNSRGPTFQSLLQLSGRLQLMTSQIDKASQTVSHPVHDLQMDESGDEDEEDEYFHDEGDDDSEISSDDES 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02857 611 SMART WD40_4 187 227 IPR001680 GO:0005515
Aip01g02857 611 SMART WD40_4 104 144 IPR001680 GO:0005515
Aip01g02857 611 SMART WD40_4 147 184 IPR001680 GO:0005515
Aip01g02857 611 SMART WD40_4 2 33 IPR001680 GO:0005515
Aip01g02857 611 MobiDBLite consensus disorder prediction 583 611 - -
Aip01g02857 611 MobiDBLite consensus disorder prediction 570 611 - -
Aip01g02857 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Aip01g02857 611 PANTHER OS03G0300300 PROTEIN 1 610 - -
Aip01g02857 611 PANTHER OS03G0300300 PROTEIN 1 610 - -
Aip01g02857 611 Pfam Dip2/Utp12 Family 472 563 IPR007148 -
Aip01g02857 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Aip01g02857 611 Pfam WD domain, G-beta repeat 10 33 IPR001680 GO:0005515
Aip01g02857 611 Pfam WD domain, G-beta repeat 190 226 IPR001680 GO:0005515
Aip01g02857 611 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 339 IPR011047 -
Aip01g02857 611 Gene3D - 4 142 IPR015943 GO:0005515
Aip01g02857 611 Gene3D - 143 278 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02857 113 232 U-box Gene Family AT2G33340 29.839 3.08e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02857 K14546 - gmx:100815458 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02857 01 130447136 130452234 Aip01g02857 01 130447136 130452234 ECH