Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02854 ATGGGGATAATGGGACAAGATTCAGATTCCAAGACCCAGTTGGTATTACAGATTTGCTCCATTGCCACCCGTTCTGTGGTGTGTGCTCATAGGCTTCTCTCAAACTCACCCAACCCATCATCTTTCATTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGATAAATACCATTCGCAAGAGATACCATAAACTGGCTCTGCAACTTCATCCAGATAAGAATCAACACCCCAAGGCTGAAATTGCCTTCAAGCTTGTTTCTGAGGCCTATACATGTTTATCCAATGCTGCAAAGAGAAGAGCATTTGACTTGGAGAGACTCAAGAGCTTATGCTTTGAATGCAAAAGAATCCCCAACACATCCAGCAATGCCGGTGGTTCGGGTTTCAAGGCATGGAATATTATCAACATCTCAAGGTCTTTCAAGCTCTGGAGAAACATAAGGGACATGAGAGAGAGATTCAAGGAGGAGGCAAAGGTGATTGAGAACTGTCTGCGAGCGAATTCCATGTCAAGGAAAGAATCTCCTCCCTATAATCCGGTTGGATACCTACAAAGAAGCAAGTCCCTGCACAGATTTGATAGAGAAACCCCTGTTTTCAATCCCTCAGATTATTTGTACCAAGGCTACCCTCATCTGAGGAGCAATGTTTACAAGAATTCTTCCACATATTGGTACCTGCAGACAGAGAGTATGCTGCATAATGCAAGGGAAGGAGCACAGCATGGCTCCCCTATTTTTGAGGTCAAATCTAGGAGTATGTTCACAAGCAAATTTGCTCAAGTCCCATCGCAATGTTAG 807 0.4387 MGIMGQDSDSKTQLVLQICSIATRSVVCAHRLLSNSPNPSSFIDWYCILGVEENAGINTIRKRYHKLALQLHPDKNQHPKAEIAFKLVSEAYTCLSNAAKRRAFDLERLKSLCFECKRIPNTSSNAGGSGFKAWNIINISRSFKLWRNIRDMRERFKEEAKVIENCLRANSMSRKESPPYNPVGYLQRSKSLHRFDRETPVFNPSDYLYQGYPHLRSNVYKNSSTYWYLQTESMLHNAREGAQHGSPIFEVKSRSMFTSKFAQVPSQC 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02854 268 CDD DnaJ 44 97 IPR001623 -
Aip01g02854 268 SUPERFAMILY Chaperone J-domain 35 108 IPR036869 -
Aip01g02854 268 SMART dnaj_3 43 100 IPR001623 -
Aip01g02854 268 ProSiteProfiles dnaJ domain profile. 44 108 IPR001623 -
Aip01g02854 268 PRINTS DnaJ domain signature 46 64 IPR001623 -
Aip01g02854 268 PRINTS DnaJ domain signature 64 79 IPR001623 -
Aip01g02854 268 PRINTS DnaJ domain signature 80 100 IPR001623 -
Aip01g02854 268 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 255 - -
Aip01g02854 268 Pfam DnaJ domain 44 105 IPR001623 -
Aip01g02854 268 PANTHER BNAC03G44070D PROTEIN 6 255 - -
Aip01g02854 268 Gene3D DnaJ domain 43 162 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02854 Aip-Chr1 130417929 130419180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02854 1 105 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.636 8.69e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02854 - - gmx:100801809 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02854 01 130417929 130419180 Aip01g02854 01 130417929 130419180 ECH
Aip01g02854 01 130417929 130419180 Aip04g01086 04 16210079 16211518 PCT