LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g02844	ATGGCGGGTGATCATTTCAACACCATGGACGATAAGAAGAGGAAGAAGAGGATCGCCTTGATTAGCGTCTCTTCCATTCTTCTCGTGGCCATGGTTGCTTGCGTTGCAGTGGGAATTGACAAGAGCGCTATGGAAGAAGAAGAAACCAGCAGTAGCACCAACACAATTGTAAAGAACCAGAAGAACGTGCATGTGATTTGCGAATCAGCGGAGTACAAAGACACGTGCGAGAAGAGCCTCGAGAAGGCCACCGCCAACGGCACCACCGACACGAAACAACTCATCATTGCTGCCTTCAACGCCACCGCGGAGGAAATTGAGAATCAGATCAACGACTCAAGCCTCGTCCAAAAGTTGGTGACCGACGACAGGAGCAAGCAGGCGTTGGATATTTGTAAGGAGGTTCTTGGTTACGCCATTGACGATATCCACAGATCTGTTCACATGATGGAGAAGTTCGAGCTGAGAAGGATCGGTCAGTACGCTTACGACCTCAAGATTTGGATCGCCGGTACACTCGCTCACCAGCAAACTTGCTTGGAAGCCTTCGAGAACGTTCCAACCGAAGCTGGCAAGGAGATGGCTAAGGTTTTGAACACCTCTCTCCAGCTAAGCAGCAACGCCTTGGATATCATCAATGGCGCCAGCAAGATCTACAAGAGCTTCAACTTGGATGCCTTCTTCGGGGATAGTGCCGCCGCCCCATCCCCAGTCCCCGCGGGCAGGAGGCTTCTGTCTGACGTGGATGAGGGTTTGCCTTCGTGGATCGAGCAAGGCCGAAGGAGTCTACTCGAAGACCCCACTCATCTGAAACCCGATTGTGTTGTGGCTCAGGACGGCAGCGGAAACTTCAAGACTCTCACGGAGGCCCTCCAGACTGTTCCTAAGAACAACAGGAAGCGTTTCGTCATCTACGTCAAGGCAGGCATCTATAAGGAGTATGTTAACTTGCAGAAGTCCATGTCCCACGTCACCATTATCGGAGATGGCCCCACAAAGACTAGATTCTCCGGCAGCAAGAATTATGTTGATGGTCTCCAGACTTACTACACCTCAACTTTCAGTGTAAATGCCGCTAACTTCATGGCGGTAAATGTTGGGTTTGAGAACACAGCAGGAGCGGAGAAGCACCAAGCGGTGGCACTCCGCGTGACAGCAGATCAAGCAGTGTTCTACAACTGCCACATGGATGGATACCAAGACACGCTATACGTGCAATCACAGAGGCAGTACTACCGCGACTGCACGGTGACGGGCACCGTTGACTTCGTGTTTGGTGACGCAGCGGGAGTGTTCCAAAACTGCACCTTCATTGTGAGGAAGCCCCTGGAAACCCAACAATGCATGGTCACTGCTGGTGGAAGGACCAAGATTGATAGCCCAACCGCCCTGGTGTTCCAGGACTGCCGCTTCACGGGCACACCAGAGTTGAAGAGCTTGCCCCGCAAGGTGTCGTACCTTGGAAGGCCATGGAGAGTGTTCTCCAAGGTTGTGATAATGGACTCTGATATTGATGATATCTTCAGTCCAGAAGGGTACATGCCGTGGATGGGAACAGCGTTCAGGGACACATGCACGTATCTTGAATACAACAACAGGGGACCTGGTGCTGTTACAAAAGGTAGAGTCACATGGCCTGGTGTTAGGGTCCTCACCTCTCTCGAGGCTGATCTATACTACCCTGGAAGGTTCTATGAGATCTCTAACCATACTGAGCGTGATGCTTGGATCGTTGATTCTGGGGTCCCTTACAATCTCGGCCCAAACAGCCCCTTCAAACTCCCATCCTTATCATTCTCACTCCCATCCATAACTTTCCCTAAGTTGGTTTAA	1833	0.5139	MAGDHFNTMDDKKRKKRIALISVSSILLVAMVACVAVGIDKSAMEEEETSSSTNTIVKNQKNVHVICESAEYKDTCEKSLEKATANGTTDTKQLIIAAFNATAEEIENQINDSSLVQKLVTDDRSKQALDICKEVLGYAIDDIHRSVHMMEKFELRRIGQYAYDLKIWIAGTLAHQQTCLEAFENVPTEAGKEMAKVLNTSLQLSSNALDIINGASKIYKSFNLDAFFGDSAAAPSPVPAGRRLLSDVDEGLPSWIEQGRRSLLEDPTHLKPDCVVAQDGSGNFKTLTEALQTVPKNNRKRFVIYVKAGIYKEYVNLQKSMSHVTIIGDGPTKTRFSGSKNYVDGLQTYYTSTFSVNAANFMAVNVGFENTAGAEKHQAVALRVTADQAVFYNCHMDGYQDTLYVQSQRQYYRDCTVTGTVDFVFGDAAGVFQNCTFIVRKPLETQQCMVTAGGRTKIDSPTALVFQDCRFTGTPELKSLPRKVSYLGRPWRVFSKVVIMDSDIDDIFSPEGYMPWMGTAFRDTCTYLEYNNRGPGAVTKGRVTWPGVRVLTSLEADLYYPGRFYEISNHTERDAWIVDSGVPYNLGPNSPFKLPSLSFSLPSITFPKLV	610

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip01g02844	610	SMART	PMEI_2	58	211	IPR006501	GO:0004857
Aip01g02844	610	PANTHER	PECTINESTERASE	10	591	-	-
Aip01g02844	610	TIGRFAM	PME_inhib: pectinesterase inhibitor domain	50	214	IPR006501	GO:0004857
Aip01g02844	610	ProSitePatterns	Pectinesterase signature 1.	298	317	IPR018040	-
Aip01g02844	610	PANTHER	PECTINESTERASE	10	591	-	-
Aip01g02844	610	SUPERFAMILY	Pectin lyase-like	270	557	IPR011050	-
Aip01g02844	610	Pfam	Pectinesterase	273	564	IPR000070	GO:0030599\|GO:0042545
Aip01g02844	610	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	61	213	IPR035513	-
Aip01g02844	610	Gene3D	-	270	588	IPR012334	-
Aip01g02844	610	Pfam	Plant invertase/pectin methylesterase inhibitor	63	211	IPR006501	GO:0004857

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g02844	Aip-Chr1	130302595	130305119	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip01g02844	10	605	Carbohydrate Esterase	AT3G05610	42.079	1.81e-174	509

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g02844	K01051		-	gmx:100800194	793.882

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip01g02844	01	130302595	130305119	Aip01g02844	01	130302595	130305119	ECH
	Aip01g02844	01	130302595	130305119	Aip04g01117	04	16972299	16974663	PCT

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