Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02843 ATGGACAATGGCGGCAATGCCAATAAGAGCAGCTACGACGACATAAACGGCAAGATAATGCTGATATCAATCATCATTGTCTCCCTCGTTCTCACCATAATGATATGCTTCCACATCTACGCCCGCTTGTATCTCCGACACTCTCGCCAACTCCGCCGCAATAATCATAGCATCCGCCGGAACGCGCACCACCACCCTCACTTCGTATTCTACGTGAACCCCGCCGTCATGTTGGCCTCCCGCGGCCTCGATGCCTCCGTGATTGCCTCCCTTCCCGTCTTCACCTTCTCCCGCAAGACCcaccctcacaccgtcgactgtcccgtttgcctctcggagttcgaggaaggggaaacgggtcgggtcttgcccacgtgcaaccacaccttccacactgaatgcatcgatatgtggttccactcccactccacctgcccactttgcagggcACCCGTGGAGACTCCGAAACGACCCGATTTGGTTATAACTGTGGGCCATTCTGAACCAGGTTCGAGTTTTCAAGGTGATGGACTGAACCAAACCGGACCCGTGGTTTCTCCTAGTTTGGTCCCAAAGGATTCTTCGTCGATTGTGAATGTGAGCGTTGAGGTGCCCGCAAGAAACGAAGATTATGGTTGTCAGTCGCCGTCGTCTTCATCGTCGTTTCGGTCACCGGTGGGTCGCATGAAGAGGATTCTGAGCAGAGAGCAAAAAGCGAGCACAGTTGGGTGCAGCTCCACGGCAGAGGAAGGTGTACGATCGGAGACTCATTTTCGAAGTGCCCCAACTCCCGTTGCACAAACCGCCCACATCGCCGCCTCTACAGTGCGCCATACTCGCACCTATGCCGCTTGCATGTGGCATCCTCGCCACTTGTATTCCCAGGCCAAGCCCGCGTTTGCGCCGCCGCAACCTCCACTCCGACGATCTTTTGGGGAGTGCCAGTGTCTTCCACAATGA 960 0.4635 MDNGGNANKSSYDDINGKIMLISIIIVSLVLTIMICFHIYARLYLRHSRQLRRNNHSIRRNAHHHPHFVFYVNPAVMLASRGLDASVIASLPVFTFSRKTHPHTVDCPVCLSEFEEGETGRVLPTCNHTFHTECIDMWFHSHSTCPLCRAPVETPKRPDLVITVGHSEPGSSFQGDGLNQTGPVVSPSLVPKDSSSIVNVSVEVPARNEDYGCQSPSSSSSFRSPVGRMKRILSREQKASTVGCSSTAEEGVRSETHFRSAPTPVAQTAHIAASTVRHTRTYAACMWHPRHLYSQAKPAFAPPQPPLRRSFGECQCLPQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02843 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 155 IPR013083 -
Aip01g02843 319 PANTHER RING-H2 FINGER PROTEIN ATL64 9 160 - -
Aip01g02843 319 Pfam Ring finger domain 106 149 IPR001841 -
Aip01g02843 319 CDD RING-H2_EL5_like 106 149 - -
Aip01g02843 319 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Aip01g02843 319 SUPERFAMILY RING/U-box 87 155 - -
Aip01g02843 319 SMART ring_2 107 148 IPR001841 -
Aip01g02843 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02843 Aip-Chr1 130290446 130295830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02843 2 241 Rapid Response to Elicitors AT3G16720 41.729 1.21e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02843 - - aip:107638764 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02843 01 130290446 130295830 Aip01g02843 01 130290446 130295830 ECH
Aip01g02843 01 130290446 130295830 Aip04g01120 04 17009608 17010879 PCT