Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02799 ATGTTTCACTCAAAGCATCACTCTCTTACAAGAGCTCTTCTCTTCTTCCTCAGCCACAACCCCCCTCTTCCATCTCCATCCACAAAATCTTACCTTCTTCTTCTTCGGCCAGAAGCACGCCGCCACTCAACCACCTCCACTTCCGATGACCACCACTCTTTCACTATCTCCTACCTCACCACCAAGTGCGGCTTCTCCCATGAAGACGCTCTCAGAGCAAACAAGCGCGTTCGCTTTGACACCCCCGTCAAGCCAGATTCCGTCATCTCCTTCTTCAAAGCCCACGGTTTCTCCCCCTCCCAAATAGCCACCATCATGTGCAAGATTCCCGTGGTACTCACATATGACCCCACCAAAGCGATCTTGCCAAAGTTTCAATTTTTGGCATCCAAAGGTGCTTCTCCCTCTGACATTGTACTCATGACCACAAAGAGTCCCAACTTCCTGCTTCGAAGCCTTAACTATATAGTATCCTTGTACGAATTGGTAAGGAGGTTCTGTCCCTCTGATCTTAAAGCCATTGCTTATCTAACTGGATGCCCATCATCCATTGCTGATGTTCGTGTGCCTCAAAATGTGAAAATGCTGCTTGATGAAGGGTTGACCAATGCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTCCTCTGCTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTGGGGTTTGATCCTTCACAGTCTTATTTCAGTGTGGTGTTGCTGACCAAAAGGGCCGTAACTAAGTCCCGATGGGATGCTAAAGTTCATGTCCTTAAGAAATGGGGCTGGTCCGAACAAGATTTTTCAGAGGCCTATAGGAGGCACCCTCAGTTTATGCTACGTTCCGAGGACAAACTCAATGCAGTGATGAGCTTTTGGATCAGTAATCTCGGCTGGGATTCTTCGGCGCTTCGCATTAGACCGGTTCTTTTTGGTTACAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTGTCAAATATCTTCTCTCCAATGGTTTGATGAAGAAGAATGCTAGCATAATCACACCATTTTCTTTGACTGAGAAGCTGTTCCTAAAGAAGTGTGTCACATGTTTTGAGGAGAAAGATAGACTTAAGTCAACTCTGCTTAATGTCAAGGTGAGTGTTGTGAGTGTGTGCCCTGTGACTCCGACAGGGCCCCTGTCGGAGTTACTCTTCTCTTCTTTCTTTAACTTCTTCCTTCATATCAAGGTTTGCTCTTTCTATTTAATACCAAATGGAATTTCATTGAGCAATTGCCCTCAGCATTTGTTCTTTGCAGGTTTTGTTTCAGATTCGCAGCTTGCCATCTTCATCTTCATGTGGACGAGTGAGCGGAGGATCATCCACCTGGAGCAGGGATGGGATTTCATTCAGCAGGGCATCACCAAGCTCAAGATAATTCTAGAAGAAGGCTTGCCTGAACCTTACTTCAGCTCCGATGACTACCTGATGCTTTACACAACCATCTATAACATGTGCACCCAAAGGCCTCCTCATGACTATTCCCAACAACTCTATGACAAGTACAAGGAGGTATTTGAAGAGTACATCCAATCAACGGTACTACCTTCTTTGAGAGAGAAGCATGATGAATTTATGTTGATAGAACTTGTAAAGAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGTTTCTTTCATTTTTTGGATCGCCACTTTATTGCCTGGAGGTCACTCCCACGCCTTAGTGAAGTTGGCTTAACTTGCTTCTGTGATTTGATTGATCAAGAACGTGAAGGAATGCATATTGATCGGGCTTTATTAAAGAATGTATTAGATATATTTGTTGGAATTGGGATGGGGCGAATGGATCACTATGAGAATGATTTTGAAACTGCAATGCTTAAAGACAGTTCTGCTTATTACTCTCAGAAGGCTTCTAATTGGATCCTAGAAGATTCTTGTTCTGATTACATGCTCAAGGCTGAGGAGTGCTTAAAATGGGAGAAAGATAGGGTTGCTCATTATTTGCACTCCAGTGGCGAGCCAAAGTTGTTAGAGAAAGTTCAACATGAGCTGCTATTCGTGTATGCAAACCAACTCCTCCAGAAAGAGCACTCTGGATGTCATGCTTTGCTTAGAGATGACAAGCATGTTATCAGTGAAGGTATGGTATTGGTTAAGCAGGCTGAAGATGCAGCTAGTACCAAAAGGGCAGAGGAAACTGAAGCTGGTCTGGTTGTTCAGGATTTCGACCCGGGGAAGCTCATGCTCCACCTGCTTAGTTTTCTTTGTTCTTGTATATTTATTT 2299 0.4415 MFHSKHHSLTRALLFFLSHNPPLPSPSTKSYLLLLRPEARRHSTTSTSDDHHSFTISYLTTKCGFSHEDALRANKRVRFDTPVKPDSVISFFKAHGFSPSQIATIMCKIPVVLTYDPTKAILPKFQFLASKGASPSDIVLMTTKSPNFLLRSLNYIVSLYELVRRFCPSDLKAIAYLTGCPSSIADVRVPQNVKMLLDEGLTNANIHHLLRTRPSVLSSADLKKTVEEVKQLGFDPSQSYFSVVLLTKRAVTKSRWDAKVHVLKKWGWSEQDFSEAYRRHPQFMLRSEDKLNAVMSFWISNLGWDSSALRIRPVLFGYSLEKRLIPRAKVVKYLLSNGLMKKNASIITPFSLTEKLFLKKCVTCFEEKDRLKSTLLNVKVSVVSVCPVTPTGPLSELLFSSFFNFFLHIKVCSFYLIPNGISLSNCPQHLFFAGFVSDSQLAIFIFMWTSERRIIHLEQGWDFIQQGITKLKIILEEGLPEPYFSSDDYLMLYTTIYNMCTQRPPHDYSQQLYDKYKEVFEEYIQSTVLPSLREKHDEFMLIELVKRWANHKIMVRWLSRFFHFLDRHFIAWRSLPRLSEVGLTCFCDLIDQEREGMHIDRALLKNVLDIFVGIGMGRMDHYENDFETAMLKDSSAYYSQKASNWILEDSCSDYMLKAEECLKWEKDRVAHYLHSSGEPKLLEKVQHELLFVYANQLLQKEHSGCHALLRDDKHVISEGMVLVKQAEDAASTKRAEETEAGLVVQDFDPGKLMLHLLSFLCSCIFI 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02799 766 Pfam Cullin family 483 713 IPR001373 GO:0006511|GO:0031625
Aip01g02799 766 SUPERFAMILY Cullin repeat-like 456 728 IPR016159 -
Aip01g02799 766 PANTHER CULLIN 3B 449 713 - -
Aip01g02799 766 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Aip01g02799 766 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Aip01g02799 766 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Aip01g02799 766 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Aip01g02799 766 Gene3D Transcription termination factor 3, mitochondrial 184 368 IPR038538 -
Aip01g02799 766 Gene3D Transcription termination factor 3, mitochondrial 63 183 IPR038538 -
Aip01g02799 766 Pfam mTERF 89 235 IPR003690 GO:0003690|GO:0006355
Aip01g02799 766 Pfam mTERF 256 357 IPR003690 GO:0003690|GO:0006355
Aip01g02799 766 PANTHER CULLIN 449 713 IPR045093 -
Aip01g02799 766 Gene3D Cullin Repeats 583 735 - -
Aip01g02799 766 Gene3D Cullin Repeats 450 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02799 Aip-Chr1 129600021 129607148 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip01g02799 Cullin 1.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02799 K03347 - adu:107464281 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02799 01 129600021 129607148 Aip01g02799 01 129600021 129607148 ECH
Aip01g02799 01 129600021 129607148 Aip04g01167 04 18355475 18356494 PCT