Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02798 AGCTGCCGCACACAATCTCTGTTTTCATGTTTCACTCAAAGCATCACTCTCTTACAAGAGCTCTTCTCTTCTTCCTCAGCCACAACCCCCCTCTTCCATCTCCATCCACAAAATCTTACCTTCTTCTTCTTCGGCCAGAAGCACGCCGCCACTCAACCACCTCCACTTCCGATGACCACCACTCTTTCACTATCTCCTACCTCACCACCAAGTGCGGCTTCTCCCATGAAGACGCTCTCAGAGCAAACAAGCGCGTTCGCTTTGACACCCCCGTCAAGCCAGATTCCGTCATCTCCTTCTTCAAAGCCCACGGTTTCTCCCCCTCCCAAATAGCCACCATCATGTGCAAGATTCCCGTGGTACTCACATATGACCCCACCAAAGCGATCTTGCCAAAGTTTCAATTTTTGGCATCCAAAGGTGCTTCTCCCTCTGACATTGTACTCATGACCACAAAGAGTCCCAACTTCTTGCTTCGAAGCCTTAACCATATAGTATCCTTGTACGAATTGGTAAGGAGGTTCTGTCCCTCTGATCTTAAAGCCATTGCTTATCTAAGTGGATGCCCATCATCCATTGCTGATGTTCGTGTGCCTCAAAATGTGAAATTGCTGCTTGATGAAGGGTTGACCAAGGCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTCCTCTGCTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTGGGGTTTGATCCTTCACAGTGTAATTTCAGTGTGGTGTTGCTGGCCAAAAAGGCCGTAACTAAGTCCCAATGGGATGCTAAAGTTGATGTCCTTAAGAAATGGGGATGGTCCGAACAAGATTTTTCGGAGGCCTTTAGGAGGCACCCTCATTTTATGCTACGTTCCAAGGACAAACTCAATGCAGTGATGAGCTTTTGGATCAGTAATCTCGGCTGGGATTCTTCGGCGTTTCGCATTAGACCGTGTCTTTTTGGATACAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTGTCAAGTATCTTCTCTCCAATGGTTTGATGAAGAAGAATGCTAGCATAATCACACCATTTTCTTTGACTGAGGAGCTGTTCCTCAAGAAGTGTATCACATGTTTTGAGGAGAAAGATAGCAATTGCCCTCACCATTTGTTCTTTGCAGGTTTTGTTTCAAATCCACAGCTTGCCATCTTCATCTTCATGTCGACGAGTGAGCGGAAGATCATTGACCTGGAGCAGGCATGGGACTTCATGCAGAAGGGCATCACCAAGCTCAAGAATATTCTAGAAGGCTTGCCTGAACCTCACTTCAGCTCCGAGGACTACATGATGCTTTACACAACCATCTATACCATGTGCACCCAAAAGCCTCCTCATGACTATTCCCAACAACTCTATGACAAGTACAAGGAGTTATTTGAAGAGTACATCCAATCAACGGTTCTTCCATCTTTGAGAGGAAAGAAAGATGACATTCTGTTGAGAGAACTGCTCACAAGATGGTCCAATCACAAAACTTTGACTTACTGGCTCTTAAGATTCTTTCATTATCTTGACAGATACTATCTCCCCAGATTTGGGCACCCTTCTACTGAAGAAACAAGTTTGTTGTCTTTCTATGACTTGGTAATAATATATGATTTTCTCATGTTATATATGAAgtttaattttaatgcattaataATTCATAAGGAAAGTGCAGGAGAGGAGGTGGATTGGAAATTGATTAACAACATTGTGGCTATCCAACCAAAAAACCATGCACAAGGCTTTGTAGAAAGACTTGTTAAAGACAATGTTGCATTCTATTCTGATGCAGCTTCAAATTGGATAGCAAGCTCTTCCTTTAAGTTTAAGGATCACACACCAAAGGAAGAGAAATTACATGAGAATCCAATAGTTTCATCAAAGAGAATAAAATTGGTGAGTTCTGATGGAGATGTGTTTGAAGTGGACTATAAAGTTGCAGTTATGTCACAAACAATTGAAGATGTCATCAAGGCTAATCCTGCTGCTGCTAGTGATGAAATTTCAATTTCTTTAGTGAATAGCAGAACACTGAAGAAGGTGATTGAATATTGCAAGAAGCACACTACTGAATCTGAATCTGAATCTGAATCTTCTTCCAAGTGGGATGCTGAATTCTTGAAGGTTGACCAACCGGAAAAACTGTTTGACCTGGTTTTGGCTTCAAACTACTTAAACATCAAGAGTCTTCTGGATCTGACAAGCAATAAAATAGGAGACATGATGAAAGGCAAGAGTCAAAGTGAAATCCGCAAGATCTTCAACATTAAGCAAGAACTTACCCCTCAAGAGGAACAAGAGATAAAGAACGAGCACGCCCAAGCATTCCAATATTAA 2366 0.4222 LPHTISVFMFHSKHHSLTRALLFFLSHNPPLPSPSTKSYLLLLRPEARRHSTTSTSDDHHSFTISYLTTKCGFSHEDALRANKRVRFDTPVKPDSVISFFKAHGFSPSQIATIMCKIPVVLTYDPTKAILPKFQFLASKGASPSDIVLMTTKSPNFLLRSLNHIVSLYELVRRFCPSDLKAIAYLSGCPSSIADVRVPQNVKLLLDEGLTKANIHHLLRTRPSVLSSADLKKTVEEVKQLGFDPSQCNFSVVLLAKKAVTKSQWDAKVDVLKKWGWSEQDFSEAFRRHPHFMLRSKDKLNAVMSFWISNLGWDSSAFRIRPCLFGYSLEKRLIPRAKVVKYLLSNGLMKKNASIITPFSLTEELFLKKCITCFEEKDSNCPHHLFFAGFVSNPQLAIFIFMSTSERKIIDLEQAWDFMQKGITKLKNILEGLPEPHFSSEDYMMLYTTIYTMCTQKPPHDYSQQLYDKYKELFEEYIQSTVLPSLRGKKDDILLRELLTRWSNHKTLTYWLLRFFHYLDRYYLPRFGHPSTEETSLLSFYDLVIIYDFLMLYMKFNFNALIIHKESAGEEVDWKLINNIVAIQPKNHAQGFVERLVKDNVAFYSDAASNWIASSSFKFKDHTPKEEKLHENPIVSSKRIKLVSSDGDVFEVDYKVAVMSQTIEDVIKANPAAASDEISISLVNSRTLKKVIEYCKKHTTESESESESSSKWDAEFLKVDQPEKLFDLVLASNYLNIKSLLDLTSNKIGDMMKGKSQSEIRKIFNIKQELTPQEEQEIKNEHAQAFQY 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02798 787 Pfam Skp1 family, tetramerisation domain 638 698 IPR016073 GO:0006511
Aip01g02798 787 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 37 378 - -
Aip01g02798 787 SUPERFAMILY Skp1 dimerisation domain-like 709 782 IPR036296 GO:0006511
Aip01g02798 787 SUPERFAMILY Cullin repeat-like 409 616 IPR016159 -
Aip01g02798 787 Gene3D Cullin Repeats 405 541 - -
Aip01g02798 787 PANTHER CGI-12 PROTEIN-RELATED 37 378 IPR003690 GO:0003690|GO:0006355
Aip01g02798 787 Gene3D Potassium Channel Kv1.1; Chain A 633 786 IPR011333 -
Aip01g02798 787 Pfam mTERF 97 243 IPR003690 GO:0003690|GO:0006355
Aip01g02798 787 Pfam mTERF 262 365 IPR003690 GO:0003690|GO:0006355
Aip01g02798 787 Pfam Skp1 family, dimerisation domain 737 784 IPR016072 GO:0006511
Aip01g02798 787 Pfam Cullin family 425 624 IPR001373 GO:0006511|GO:0031625
Aip01g02798 787 SUPERFAMILY POZ domain 638 699 IPR011333 -
Aip01g02798 787 Gene3D Transcription termination factor 3, mitochondrial 192 376 IPR038538 -
Aip01g02798 787 Gene3D Transcription termination factor 3, mitochondrial 59 191 IPR038538 -
Aip01g02798 787 SMART mt_12 314 348 IPR003690 GO:0003690|GO:0006355
Aip01g02798 787 SMART mt_12 111 142 IPR003690 GO:0003690|GO:0006355
Aip01g02798 787 SMART mt_12 215 243 IPR003690 GO:0003690|GO:0006355
Aip01g02798 787 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Aip01g02798 787 CDD BTB_POZ_SKP1 638 751 - -
Aip01g02798 787 SMART skp1_3 636 736 IPR001232 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02798 Aip-Chr1 129568886 129598573 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip01g02798 Cullin 2.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02798 K03347 - ahf:112704153 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02798 01 129568886 129598573 Aip04g01168 04 18385804 18387436 PCT