Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02792 ATGGAACGGTACGGCCGTCCCGGCGAAGGGCCGCAGCCTGATCCGCCGCCGGAGTGGAACGTCGGCGCCGGCGACACGGGGCTCGAAGAGTCTATGTGGAAGCTTGGATTGGGTGGTGGCACCGAATCGTACCCTCAGAGGCCTGATGAAGCTGATTGTATCTATTATCTCAAGACAGGTTTTTGCGGCTATGGTTCGCGTTGTCGGTTCAACCACCCACGTGACCGTGGCGCGGTTATTGGAGCTGCCAGGAGTGGAGGGGAGTATCCGGAGCGTGCGGGCCAGCCTCTATGCCAGTATTTTATGAGGACAGGATCATGCAAATTCGGTTCTTCTTGCAAGTACAACCATCCTAGGCAGGCAGCAGGAACTCCTGCACTTGTCTCACTAAATTATTATGGATATCCGTTGCGAGTGCCTGCAGGTGTCCAAATTCCCGCACCATCACCAGTTCCCCCGGTTTCACCTCTACCTGTACAGGTACCTTCTCCATTATATCCAACCGTGCAGCCTCCATCTGGTCCTTCGCAACAGCAATATAGTGTACTGGTTGCAAGGCCTCCGTTGCTGCCTGGCTCATTAGTCCAGGGCCCTTATGGGCCTGTGGTAGTGTCCCCTGCCATGGTCCCCTTTCCAGGCTGGAATCCTTATCAGGCTCAAGCAACAAGCCCCCTACTTCCCTCTAGTACTCCATCTAATGTTGGTCCAACACAGCTTTACAGGATAACCCAGCTGCCTTCTCAGGCAACTGGGTATTCTGCACCTTATCAACCTTCTGGCCCCTCTGTTGATCCTTCAGGTAGTAGTACTCAGAAGGAGAACCCATATCCTGAAAGGCCTGATCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCATCAGACCTTAATGCACCGAAGGGGAATGTGGCCCTTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAATCTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCCATGGGTTCTCTCAGTTATAGCCCATCTGCTTCTTCCTTGGCTGATATGCCGGTTGCACCGTATCCCGTGGGTTCCTCAATGGGCACTCTTGCTCCATCATCATCTTCATCAGAGTTGCGGCCTGAACTTGCTTCAGGATTGAGCAAGGAGTCTGTTTCATCCAGAATGTCTTCATCGATGAGCACTTCAAGTGGATCAGTTGGCTTGACCTTGTCAACTGCAGGACCAATTTCTCAATCGGGCACCCAACCCTCTGCTCAGAGTTCCAGTTCTTCAGCAACTGCCAGCAGCGCCGCAACAAGCAGCGCCACATCTCACACCTCAAGCTAA 1383 0.5249 MERYGRPGEGPQPDPPPEWNVGAGDTGLEESMWKLGLGGGTESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRGAVIGAARSGGEYPERAGQPLCQYFMRTGSCKFGSSCKYNHPRQAAGTPALVSLNYYGYPLRVPAGVQIPAPSPVPPVSPLPVQVPSPLYPTVQPPSGPSQQQYSVLVARPPLLPGSLVQGPYGPVVVSPAMVPFPGWNPYQAQATSPLLPSSTPSNVGPTQLYRITQLPSQATGYSAPYQPSGPSVDPSGSSTQKENPYPERPDQPECQYYMKTGECKFGPSCRYHHPSDLNAPKGNVALSPVGLPLRPGAPPCTHYTQRGICKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSELRPELASGLSKESVSSRMSSSMSTSSGSVGLTLSTAGPISQSGTQPSAQSSSSSATASSAATSSATSHTSS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02792 460 ProSiteProfiles Zinc finger C3H1-type profile. 279 307 IPR000571 GO:0046872
Aip01g02792 460 MobiDBLite consensus disorder prediction 250 284 - -
Aip01g02792 460 MobiDBLite consensus disorder prediction 1 25 - -
Aip01g02792 460 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Aip01g02792 460 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Aip01g02792 460 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 328 352 IPR000571 GO:0046872
Aip01g02792 460 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 305 IPR000571 GO:0046872
Aip01g02792 460 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Aip01g02792 460 MobiDBLite consensus disorder prediction 250 276 - -
Aip01g02792 460 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Aip01g02792 460 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 138 - -
Aip01g02792 460 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 139 445 - -
Aip01g02792 460 SUPERFAMILY CCCH zinc finger 329 355 IPR036855 GO:0046872
Aip01g02792 460 PANTHER PROTEIN PHOSPHATASE RELATED 1 138 - -
Aip01g02792 460 PANTHER PROTEIN PHOSPHATASE RELATED 139 445 - -
Aip01g02792 460 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Aip01g02792 460 SMART c3hfinal6 325 352 IPR000571 GO:0046872
Aip01g02792 460 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Aip01g02792 460 SMART c3hfinal6 279 306 IPR000571 GO:0046872
Aip01g02792 460 ProSiteProfiles Zinc finger C3H1-type profile. 325 353 IPR000571 GO:0046872
Aip01g02792 460 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Aip01g02792 460 MobiDBLite consensus disorder prediction 378 460 - -
Aip01g02792 460 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Aip01g02792 460 SUPERFAMILY CCCH zinc finger 282 306 IPR036855 GO:0046872
Aip01g02792 460 Gene3D - 273 363 - -
Aip01g02792 460 Gene3D - 45 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02792 Aip-Chr1 129465815 129469976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02792 1 427 C2H2 Transcription Factor Family AT5G18550 51.509 1.44e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip01g02792 zf-CCCH 8.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02792 - - gmx:100789405 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02792 01 129465815 129469976 Aip01g02792 01 129465815 129469976 ECH
Aip01g02792 01 129465815 129469976 Aip10g00158 10 1491242 1496707 PCT