Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02789 ATGAGGGGATCTTATAACAAAAACTGTTCTTTCACAGAAACCCTGCAAAAACAATCCTTTACGGTGAATTACCTCGTCAACAATTGTGAGCTCCTCCCAGATTCCGCTCTTAAAGCTTCAAAATACGTACTTTTTAAGAGTCCAGAGAAACCCGACTCAGTCATCGCACTCTTCAGGAGCTTCGGTTTCTCAGATTTGCAAATTCACAATGTCATTCGGAAAAAGCCCCGGATTCTCGTCAGCAAACCCAAAGAGACCATCTTGCCCAAGTTCCAGTTCCTCATCTCCAAAGGTTTTTCAAAATCACAACTTGCCCGCCTCATCGTTCTCAACCCTATAATCTTGGCAAGAAGCTTAGAGAAACACCTGATCCCCACTTTCGATTTGTTGAACAATTTCATTCGTTCTGAAGAAAGGACCGTTGCTTCTATCTTACGTACTGCCCAAATTTTAACTTATTCTAGCTTGCTTCGAAATGTTAAATTGTTGGTTGATTTAGGGGTCCGTGAGAGAAGCGTGGCAAGGCTAATTCGCCAGTGGCCTTCGTTGCTTCTATTCAATTCTGAAGTTAGCCTTAAGAGTATAGTAGATGAAGTCATTAAAATGGGGGTTGATCCCAAAAAGGCTAATTTTGTTCCTGCATTGTATGCTACGTATCTTCCCAAGTCCATGTGGGATAAGAAGGTTGAGTTGTTCAAGAGGTTTGGATTAACTGACGACAACATTCGTGAGGCGTTTGTGAAGCACTCTTGCTTTATGCTGATATCTGTGCAGAAAATTGAGGCCTGCATTGAATTCTTTGTCAAAGAACTCGGTTGGAAGCCTGTTGATGTCACCAATTATCCGCTTCTTCTCTCGCTGGATTTGGAGAAAAGGGTTGTTCCGAGGGCTGCTGTCTTGAAGATTCTCATGGCCAATGGTGTCATTAAGAGTGGTAGGATTGGCAAAGTTAGGGACTATTATGGTGAAggatgtgaaaagaaaagagcagctgatgctgctcaagctgcagctgatgctgcagctgctgcaaaggcagcagaggctgctaaagcccctaaaaatgctagtgcacaagcaactgcaactgcccaggccaccacaactgacactgcaaCTGCCTCTGCATCTGCCAGCGCCACTGCAACTGCTACTCCAAATGCAACTACTACTGCTACAGCTACGGCTAATGCTAATATTACCATCAATTCTGCTCCTATTGGTCAAGCATCAGAAATTGATCTGTCACAGCCAATTTGTTCTGAACCAGAAGACTCTCAAAAGTTCACTGAAGTAACCGGGGAaccagccacaagacctgccaaactgcctactagaagaagGCAGAGGTGGCTTCAGCAATCCCCAAATCACTCTTTCGAGTTCAAATGCTGCTTTGTGATTGGTTTCATGGTCAGAGTGATTCCAGAGCAAGATACTATCCCAGAAGAGGTCAGGCTTACCCTTCCGAAGCAGTGCGAGCTGAGTCATTTTGAGCATACTTTCCAATATTGTGTGTTCAGAACTTCAGATAGTAAAGGAGACATGGGGTTTCAAGTGGGAGACATGCAAGGCACTATACCCGTTACACTTGGGCTCTCGAGACAGCATTCTTTCCTCAGGTAA 1626 0.3862 MRGSYNKNCSFTETLQKQSFTVNYLVNNCELLPDSALKASKYVLFKSPEKPDSVIALFRSFGFSDLQIHNVIRKKPRILVSKPKETILPKFQFLISKGFSKSQLARLIVLNPIILARSLEKHLIPTFDLLNNFIRSEERTVASILRTAQILTYSSLLRNVKLLVDLGVRERSVARLIRQWPSLLLFNSEVSLKSIVDEVIKMGVDPKKANFVPALYATYLPKSMWDKKVELFKRFGLTDDNIREAFVKHSCFMLISVQKIEACIEFFVKELGWKPVDVTNYPLLLSLDLEKRVVPRAAVLKILMANGVIKSGRIGKVRDYYGEGCEKKRAADAAQAAADAAAAAKAAEAAKAPKNASAQATATAQATTTDTATASASASATATATPNATTTATATANANITINSAPIGQASEIDLSQPICSEPEDSQKFTEVTGEPATRPAKLPTRRRQRWLQQSPNHSFEFKCCFVIGFMVRVIPEQDTIPEEVRLTLPKQCELSHFEHTFQYCVFRTSDSKGDMGFQVGDMQGTIPVTLGLSRQHSFLR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02789 541 MobiDBLite consensus disorder prediction 426 447 - -
Aip01g02789 541 SMART mt_12 69 100 IPR003690 GO:0003690|GO:0006355
Aip01g02789 541 SMART mt_12 174 205 IPR003690 GO:0003690|GO:0006355
Aip01g02789 541 SMART mt_12 243 274 IPR003690 GO:0003690|GO:0006355
Aip01g02789 541 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Aip01g02789 541 SMART mt_12 105 136 IPR003690 GO:0003690|GO:0006355
Aip01g02789 541 SMART mt_12 141 169 IPR003690 GO:0003690|GO:0006355
Aip01g02789 541 PANTHER CGI-12 PROTEIN-RELATED 14 314 IPR003690 GO:0003690|GO:0006355
Aip01g02789 541 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 14 314 - -
Aip01g02789 541 Gene3D Transcription termination factor 3, mitochondrial 153 314 IPR038538 -
Aip01g02789 541 Pfam mTERF 56 195 IPR003690 GO:0003690|GO:0006355
Aip01g02789 541 Pfam mTERF 156 310 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02789 Aip-Chr1 129404798 129411443 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip01g02789 mTERF 8.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02789 K15032 - pop:7463617 239.195