Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02788 ATGAGGGGATCTTATAACAAAAACCTGTTCTTGTACCACCTCACTGTCATCACAAGAACATCATCACCCTCATTTCTGATCCCTTCACCATCTTCCCTATTCCGTGCTCCCAATTACACCACAGTCACAGAAACCCTGGAAAAACAATCCTTTACGGTGAATTACCTCGTCAACAATTGTGGGCTCCTCCCAGATTCGGCTCTTAAAGCTTCAAAATACGTACTTTTTAAGACTCCAGAGAAACCCGACTCAGTCATCGCACTCTTCAGGAGCTTCGGTTTCTCAGATTTGCAAATTCACAATGTCATTCGGAAAAAACCCCGGATTCTCGTCAGCAAACCCAAAGAGACCATCTTGCCCAAGCTCGAGTTCCTCATCTCCAAAGGTGCTTCAAAATCACAACTTGTCCGCATCATCGATCTCAACCCTCTAATCTTGCAAAGAAGCTTAGAGAAACACCTAATCCCCACTTTCGATTTGTTGAACAATTTCATTCTTTCTGAAGAAAGGACCATTGCTTCTATTTTACGCTCTGTCCAAATTTTAACTTCTTCAACGTCGCATCGGAATATTAACTTGCTGGTAGATTTAGGTGTCCGTGAGAGAAGCTTGGCAAGGCTACTTCGCCAATGGCCTTGGTTGCTTCTGGTCAATTCTAAAGACCTTAAGAGTATGGTAGATGAAGTCATTAAAATGGGGGTTGATCCCGCCAAGGCTAATTTTGTTCCTGCATTGTATGCTAAGCTGCTTCCAAAGTCCATGTGGGATAGGAAAGTTGAGTTGTACAAGAGGTTTGGATTAACTGATGACAACATTCGTGAGGCTTTTGTGAAGCACCCTTTCTGTATGCTGAAATCTGTGCAGAAAATTGAGGCCTGCATCGAATTCTTTGTCAAAGAACTCGGTTGGAAGCCTCTTGATGTCACCAATTATCCGGTTCTTCTCTCGCTGAATTTGGAGAAAAGGGTTGTTCCCAGGGCTGCTGTCTTGAAGATTCTTATGGCCAATGGTGCCATTAAGAGTTGTAAGCATTTGTTAGCATATACTGTTTCGGAAGAGATGTTCTTTAAGAGTTATGTGAATCGTGGTAAGGATCAAGCACCGGAGTTATTGAAGCTGTATCGGGAGAAAATGAATCTTCCAGTAATGGATAGTAAATTGATGTCTTGA 1170 0.4256 MRGSYNKNLFLYHLTVITRTSSPSFLIPSPSSLFRAPNYTTVTETLEKQSFTVNYLVNNCGLLPDSALKASKYVLFKTPEKPDSVIALFRSFGFSDLQIHNVIRKKPRILVSKPKETILPKLEFLISKGASKSQLVRIIDLNPLILQRSLEKHLIPTFDLLNNFILSEERTIASILRSVQILTSSTSHRNINLLVDLGVRERSLARLLRQWPWLLLVNSKDLKSMVDEVIKMGVDPAKANFVPALYAKLLPKSMWDRKVELYKRFGLTDDNIREAFVKHPFCMLKSVQKIEACIEFFVKELGWKPLDVTNYPVLLSLNLEKRVVPRAAVLKILMANGAIKSCKHLLAYTVSEEMFFKSYVNRGKDQAPELLKLYREKMNLPVMDSKLMS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02788 389 SMART mt_12 100 131 IPR003690 GO:0003690|GO:0006355
Aip01g02788 389 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Aip01g02788 389 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Aip01g02788 389 SMART mt_12 136 167 IPR003690 GO:0003690|GO:0006355
Aip01g02788 389 SMART mt_12 305 336 IPR003690 GO:0003690|GO:0006355
Aip01g02788 389 Gene3D Transcription termination factor 3, mitochondrial 190 367 IPR038538 -
Aip01g02788 389 Gene3D Transcription termination factor 3, mitochondrial 63 189 IPR038538 -
Aip01g02788 389 Pfam mTERF 190 349 IPR003690 GO:0003690|GO:0006355
Aip01g02788 389 Pfam mTERF 87 239 IPR003690 GO:0003690|GO:0006355
Aip01g02788 389 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 41 380 - -
Aip01g02788 389 PANTHER CGI-12 PROTEIN-RELATED 41 380 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02788 Aip-Chr1 129385414 129386583 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip01g02788 mTERF 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02788 K15032 - pvy:116121303 282.722