Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02786 ATGAGGGGATCTTATAACAAAAACCTGTTCTTGTACCACCTCACTGTCATCACAAGAACCTCATCACCCTCATTTCTGATCCCTTCACCATCTTCCCTATTCCGTGCTCCCAATTACGCCACAGTCACAGAAACCCCGGAAATACAATCCTTTACGGTGAATTACCTCGTCAACAATTGTGGGTTCCTCCCAGATTCGGCTCTTAAAGCTTCAAAATACGTACTTTTTAAGACTCCAGAGAAACCCGACTCAGTCATCGCACTCTTCAGGAGCTTCGGTTTCTCAGATTTGCAGATTCACAATGTCATTCGGAAATCGCCCGGGATTCTCGTCAGCAAACCCAAAGAGACCATCTTGCCCAAGCTCGAGTTCCTCATCTCCAAAGGTGCTTCAAAATCACAACTTGCCCGCATCATCGATCTCAACCCTCTAATCTTGAAAAGAAGCTTAGAGAAACACCTGATCCCCGCTTTCGATTTGTTGAACAATTTCATTCGTTCTGAAGAAAGGACCGTTGCTTCTATCTTACGTGCTGGCCAAATTTTAACTTCTTCTAGGTCGCTTCGAAATATTAACATGTTGGTTGATATAGGGGTCCGGGAGAAAAGCATGGCAAGGCTAATTCGCCAGTGGCCTTGGTTGCTTATATGCAATTCTGAAGTTCGCCTTAAGAGTATGGTAGATGAAGTCATTAAAATGGGGGTTGATCCCAACAAGGCTAATTTTGTTCCTGCATTGTATGCTACGTATCTTCCAAAGTCCATGTGGGATAAGAAGGTTGAGTTGTTCAAGAGGTTTGGATTAACTGACGACAACATTCTTGAGGCGTTTGTGAAGCACTCTTGCTGTATGTTGATATCTATGCAGAAAACTGAGGCCTGCATTGAATTCTTTGTCAAAGAACTCAGTTGGAAGCCTGTTGATGTCACCAATTATCCGGTTCTTCTCTCGCTGAATTTGGAGAAAAGGGTTGTTCCGAGGGCTGCTGTCATGAAGATTCTTATGGCCAATGGTGCCATTAGCAGTGGTAAGCATTTGTTAGCATATACTGCTTCGGAAGAGAGGTTCTTTAAGAAGTATGTGAATCGTGGTAAGGATCAAGCACCGGAGTTATTGAAGCTGTATCGGGAGAAAATGAATCTTCCAGTAATGGATAGTAAATTGAAGTCTTGA 1173 0.4331 MRGSYNKNLFLYHLTVITRTSSPSFLIPSPSSLFRAPNYATVTETPEIQSFTVNYLVNNCGFLPDSALKASKYVLFKTPEKPDSVIALFRSFGFSDLQIHNVIRKSPGILVSKPKETILPKLEFLISKGASKSQLARIIDLNPLILKRSLEKHLIPAFDLLNNFIRSEERTVASILRAGQILTSSRSLRNINMLVDIGVREKSMARLIRQWPWLLICNSEVRLKSMVDEVIKMGVDPNKANFVPALYATYLPKSMWDKKVELFKRFGLTDDNILEAFVKHSCCMLISMQKTEACIEFFVKELSWKPVDVTNYPVLLSLNLEKRVVPRAAVMKILMANGAISSGKHLLAYTASEERFFKKYVNRGKDQAPELLKLYREKMNLPVMDSKLKS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02786 390 Pfam mTERF 190 350 IPR003690 GO:0003690|GO:0006355
Aip01g02786 390 Pfam mTERF 87 209 IPR003690 GO:0003690|GO:0006355
Aip01g02786 390 Gene3D Transcription termination factor 3, mitochondrial 189 368 IPR038538 -
Aip01g02786 390 Gene3D Transcription termination factor 3, mitochondrial 59 188 IPR038538 -
Aip01g02786 390 SMART mt_12 100 131 IPR003690 GO:0003690|GO:0006355
Aip01g02786 390 SMART mt_12 136 167 IPR003690 GO:0003690|GO:0006355
Aip01g02786 390 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Aip01g02786 390 SMART mt_12 306 337 IPR003690 GO:0003690|GO:0006355
Aip01g02786 390 SMART mt_12 205 236 IPR003690 GO:0003690|GO:0006355
Aip01g02786 390 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 40 381 - -
Aip01g02786 390 PANTHER CGI-12 PROTEIN-RELATED 40 381 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02786 Aip-Chr1 129381590 129382762 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip01g02786 mTERF 8.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02786 K15032 - csin:114314112 270.781