Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02784 ATGCGGGGATCTTGTCTCAAAAACCTGTTCTTGTACCACCTTACTGTCATAACAAGAACCCCATCAACCTCATTTCTGATTCCTTCACCATCTTCCCCATTCCCTGCTCCCAATTACGCCACAGCCACAAAAACCCTGGAAAAACAATCCTTTACGGTGAATTACCTCGTGGAAAATTGTGGGTTCCTCCCAGATTCCGCTCTTCATACTTCGAAATACGTCCTTTTAAAGAGTCCCGAGAAACCCGACTCAGTCATCGCACTCTTCAGGAGCTTCGGTTTCTCAGATTTGCAGATTCACAATGTCATTCGGAGATCGCCCCAGCTTCTCGTCAGCAAACCCAAAGAGACCATCTTGCCCAAGCTCCAGTTCCTCATCTCCAAAGGTGCTTCAAAATCCCAACTTGCCCGCCTCATCGAGCTCAACCCTCTAATCTTGAAAAGAAGCTTAGAGAAACACCTGATCCCCACTTTCGATTTGTTGAACAATTTCATTCGTTCTGAAGAAAGGACCGTTGCTTCTATCTTACGCGCTGGCCAAATTTTAACTTGTTCTAGGACGCTTCGAAATATTAACATGTTGGTTGATTTAGGAGCCCGTGAGATAAGCATGTCATGGCTAATTCGCCAGTGGCCTTGGTTGATTCTATACACTTCTGAAGTTCGCCTTAAGAGTATAATAGATGAAGTCATTAAAATGGGGGTTGATCCCAACAAGTCTAATTTTGTTCCTGCATTATATGCTAAGTTTCTTCCAAAGTCCATGTGGGATAAGAAAGTTGAGTTGTACAAGAGTTTTGGATTAACTGATGACAACATTCGTGAGGCTTTTGTGAAGCACCCTTTCTGTATGCTGAAATCTGTGCAGAAAATTGAGGACTGCATTGGATTGTTTGTCAAAGAACTCGGTTGGGAGCCTGCTGAAGTAACCAATAATCCGGTTCTTCTCTCGCTGGATTTGGACAAAAGGGTATTTCCGAGGGCTGCTGTCATGAAGATTCTTATCTCCAATGGTGTCATTAAGAGTGGCAGGCATGTTTCTGCATATTATGTTTCTGAAGGGGATTTCTTTAAGAAGTATGTTAATCGTGCTAAGGATCATGCTCCCGACTTATTGAAGCTGTATCATGAGAAAATGAATCTTGCAGTAATGGATAGTAAATTGATGTCTTGA 1173 0.428 MRGSCLKNLFLYHLTVITRTPSTSFLIPSPSSPFPAPNYATATKTLEKQSFTVNYLVENCGFLPDSALHTSKYVLLKSPEKPDSVIALFRSFGFSDLQIHNVIRRSPQLLVSKPKETILPKLQFLISKGASKSQLARLIELNPLILKRSLEKHLIPTFDLLNNFIRSEERTVASILRAGQILTCSRTLRNINMLVDLGAREISMSWLIRQWPWLILYTSEVRLKSIIDEVIKMGVDPNKSNFVPALYAKFLPKSMWDKKVELYKSFGLTDDNIREAFVKHPFCMLKSVQKIEDCIGLFVKELGWEPAEVTNNPVLLSLDLDKRVFPRAAVMKILISNGVIKSGRHVSAYYVSEGDFFKKYVNRAKDHAPDLLKLYHEKMNLAVMDSKLMS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02784 390 SMART mt_12 205 236 IPR003690 GO:0003690|GO:0006355
Aip01g02784 390 SMART mt_12 100 131 IPR003690 GO:0003690|GO:0006355
Aip01g02784 390 SMART mt_12 136 167 IPR003690 GO:0003690|GO:0006355
Aip01g02784 390 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Aip01g02784 390 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Aip01g02784 390 SMART mt_12 172 200 IPR003690 GO:0003690|GO:0006355
Aip01g02784 390 Gene3D Transcription termination factor 3, mitochondrial 63 187 IPR038538 -
Aip01g02784 390 Gene3D Transcription termination factor 3, mitochondrial 188 368 IPR038538 -
Aip01g02784 390 Pfam mTERF 87 202 IPR003690 GO:0003690|GO:0006355
Aip01g02784 390 Pfam mTERF 190 341 IPR003690 GO:0003690|GO:0006355
Aip01g02784 390 PANTHER CGI-12 PROTEIN-RELATED 46 381 IPR003690 GO:0003690|GO:0006355
Aip01g02784 390 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 46 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02784 Aip-Chr1 129351826 129352998 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip01g02784 mTERF 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02784 K15032 - csin:114314112 259.996