Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02778 ATGGGGAGGCCCTCCAAATCTCAGCCTTCTTCAGACGACGAAGCGCCGTCGAATGCCTCTGACTCCGATTCCGATTCCGGTTCGGAGGAGCAACTTCCCAACGATCAGATCAACGAACAAGAAGATGACGAGGAGCTCGAAGAGGTGGCTCGCTCCGCTAGCTCTGGCGATGACGATACTGCGCCGGATGAACCTGCCGGAGACGCCGACGACGATGAACAGGAGGAAAATAATGCTGACACTGAAGTTAGCAAGCGCGAGAAGGCGAGGTTGAAAGAAATGCAGAAATTGAAGAAGCAGAAGATTCAGGAGATTCTGGATGAACAAAATGCAGCTATTGATGCTGATATGAACAATAAAGGAAAGGGCCGATTGAAGTATCTGTTGCAGCAAACTGAGATTTTTGCTCATTTTGCCAAAGGTGCTCAATCTTCTTCTCAGAAGAAGTCAAAGGGAAGGGGACGCCATGCATCGAAAGTGACTGAAGAAGAGGAAGATGAAGAGTATCTTAAAGAAGAAGAAGATGGTTTGGCAAGCACGCGGCTGGTAACACAACCATCATGTATCCAAGGGAAGATGAGGGATTATCAACTTGCTGGGTTAAACTGGCTCATACGATTGTATGAGAATGGTATAAATGGAATTCTGGCAGATGAAATGGGACTTGGGAAAACATTACAAACTATATCTTTGCTAGGGTATTTATATGAGTTCAGAGGTATAAAGGGTCCTCATATGGTTGTGGCCCCAAAGTCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTTTACGAGCAGTAAAGTTCCTTGGCAACCCGGATGAAAGGAGGCATATAAGAGAGGAGTTATTGGTTGCCGGGAAGTTTGATGTATGTGTTACAAGTTTTGAAATGGTTATCAAGGAGAAGTCTGCATTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAGGCCCACAGAATCAAGAATGAGAACTCCCTCCTTTCCAAGACGATGAGGCTCTATAATACAAACTACCGACTCCTTATAACTGGCACACCACTCCAAAACAATCTTCATGAACTCTGGGCTCTTCTCAATTTTCTTCTGCCTGAAATTTTTAGCTCTGCTGAAACTTTTGATGAATGGTTCCAAATATCAGGTGAAATGAACCTCCTTTGTTTGTTGAGTGTTGTCCTTCGCCCATTTCTCCTTCGGAGGTTGAAGTCAGATGTCGAGAAAGGGTTGCCACCGAAAAAGGAAACTATACTCAAAGTAGGCATGTCACAAATGCAGAAGCAGTACTATAGGGCATTACTACAGAAAGATCTAGAGGTTGTCAATGCTGGTGGAGAACGAAAGCGACTCCTCAACATAGCAATGCAACTGCGTAAATGCTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCCGGTCCTCCCTATACTACAGGAGACCATCTCGTCACAAATGCTGGTAAAATGGTTCTATTGGATAAGTTACTTCCTAAATTAAAAGAGCGTGACTCCCGGGTCCTGATATTTTCACAGATGACTAGGCTGCTGGACATACTTGAAGATTATTTGATGTTTCGGGGATATCAATATTGTCGTATAGATGGAAACACCGGTGGAGAAGATCGTGATGCTTCCATTGAAGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTCGGCATCAATCTTGCTACTGCTGATGTTGTAATTCTTTATGATAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGTGCTCATAGGATTGGACAGAAGAAAGAAGTACAAGTTTTCCGATTTTGCACGGAGTATACAATTGAAGAGAAAGTAATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTAGTGATTCAGCAAGGCCGATTAGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCCAAAGGAGAGGAAGCTACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACAATGCTGAGCTTTATGATTTTGATGATGACAAGGATGAGAACAAATTTGATTTCAAAAAGATTGTGAGTGAAAACTGGATTGAGCCACCGAGAAGAGAGCGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACATTGCGCCAAGGAGGTCCTACTAAACCGAAGGAGCCCCGTATTCCCAGGATGCCTCAACTGCATGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACGCATCAGAAGAATCAAGTAAAAGACTCCATAGAGGTGGATGAACCAGAAGAGGTGGGAGATCCACTGACTGCTGAAGAGTTGGAAGAAAAGGAGCAGCTGCTAGAGGAGGGTTTCTCATCATGGAGCAGGAGGGATTTTAATACTTTCGTTAGGGCCTGTGAAAAATATGGCCGAAATGATATTAAAGGTATTGCTTCTGAGATGGAAGGAAAAACAGAAGAGGAAGTTGAGAGATATGCGGTGGTCTTCAAAGAAAGATACAAGGAATTAAACGATTATGATAGAATTATTAAAAACATCGAAAGAGGGGAAGCTAGAATATCCCGGAAAGATGAGATTATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGTTAGAACTAAAGATACAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGGAATTGGGATGAACTGAAGGCAGCATTTCGAATGTCACCTTTGTTTCGTTTTGATTGGTTTGTTAAGTCTCGCACAACGCAAGAACTAACAAGGAGGTGTGACACCCTCATTCGCCTTGTTGAGAAGGAAAACCAAGAATATGACGAAAGAGAGAGACAGGCTCGTAAGGAGAAGAAACTTGCAAAGAGTAGTACCCCATCAAAGCGTACCATGCCACGACAGACGGAGTCTCCATCTTCGAAGAAGCGCAAGCAGCTGACCATGGATAACTTTGTAAGCTCGGGGAAGAAGAAAAAATAA 3195 0.4282 MGRPSKSQPSSDDEAPSNASDSDSDSGSEEQLPNDQINEQEDDEELEEVARSASSGDDDTAPDEPAGDADDDEQEENNADTEVSKREKARLKEMQKLKKQKIQEILDEQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGAQSSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLASTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLYEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEMNLLCLLSVVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDNAELYDFDDDKDENKFDFKKIVSENWIEPPRRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIEVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRRDFNTFVRACEKYGRNDIKGIASEMEGKTEEEVERYAVVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAKSSTPSKRTMPRQTESPSSKKRKQLTMDNFVSSGKKKK 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02778 1064 CDD DEXHc_SMARCA1_SMARCA5 190 407 IPR044754 GO:0005524
Aip01g02778 1064 Coils Coil 84 111 - -
Aip01g02778 1064 SUPERFAMILY Homeodomain-like 896 1018 IPR009057 -
Aip01g02778 1064 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 646 IPR001650 -
Aip01g02778 1064 SUPERFAMILY Homeodomain-like 844 894 IPR009057 -
Aip01g02778 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 405 IPR027417 -
Aip01g02778 1064 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 753 843 IPR036306 GO:0003677|GO:0006338|GO:0031491
Aip01g02778 1064 MobiDBLite consensus disorder prediction 749 774 - -
Aip01g02778 1064 ProSiteProfiles SANT domain profile. 840 892 IPR017884 -
Aip01g02778 1064 MobiDBLite consensus disorder prediction 1 96 - -
Aip01g02778 1064 Gene3D ISWI, HAND domain 742 840 IPR036306 GO:0003677|GO:0006338|GO:0031491
Aip01g02778 1064 Pfam Helicase conserved C-terminal domain 493 605 IPR001650 -
Aip01g02778 1064 MobiDBLite consensus disorder prediction 140 175 - -
Aip01g02778 1064 Gene3D iswi atpase 896 928 - -
Aip01g02778 1064 SMART helicmild6 521 605 IPR001650 -
Aip01g02778 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 688 IPR027417 -
Aip01g02778 1064 SMART ultradead3 189 381 IPR014001 -
Aip01g02778 1064 Gene3D - 411 703 IPR027417 -
Aip01g02778 1064 Gene3D - 158 390 IPR038718 -
Aip01g02778 1064 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 370 IPR014001 -
Aip01g02778 1064 MobiDBLite consensus disorder prediction 61 78 - -
Aip01g02778 1064 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 17 1064 - -
Aip01g02778 1064 Gene3D - 841 895 - -
Aip01g02778 1064 Pfam SNF2-related domain 206 470 IPR000330 GO:0005524|GO:0140658
Aip01g02778 1064 Pfam HAND 754 837 IPR015194 GO:0003677|GO:0006338|GO:0031491
Aip01g02778 1064 SMART sant 943 1004 IPR001005 -
Aip01g02778 1064 SMART sant 841 890 IPR001005 -
Aip01g02778 1064 CDD SANT 844 888 IPR001005 -
Aip01g02778 1064 PANTHER SNF2/RAD54 HELICASE FAMILY 17 1064 - -
Aip01g02778 1064 MobiDBLite consensus disorder prediction 1011 1064 - -
Aip01g02778 1064 CDD SF2_C_SNF 491 616 - -
Aip01g02778 1064 Pfam SLIDE 898 1008 IPR015195 GO:0003677|GO:0005634|GO:0006338
Aip01g02778 1064 Gene3D - 929 1032 - -
Aip01g02778 1064 MobiDBLite consensus disorder prediction 79 96 - -
Aip01g02778 1064 MobiDBLite consensus disorder prediction 1011 1029 - -
Aip01g02778 1064 Coils Coil 991 1025 - -
Aip01g02778 1064 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02778 Aip-Chr1 129295630 129302915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02778 214 632 RAD5 or RAD16-like Gene Family AT1G02670 28.088 2.40e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip01g02778 SNF2_N 1.7e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02778 K11654 - gmx:100791510 1863.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02778 01 129295630 129302915 Aip01g02778 01 129295630 129302915 ECH