Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02706 ATGCTGCCTCCTCAAAAGAGGCTTGCACCGGATTGCTGTCGGACATTCCTTACAGTCTGGGCGCCCACTGAAAGCAGTCGGAATTGTCTATCTACTCATGCAGCAGGTTTCGCCACTTCCTCCATAAACAAGAACAAAGAAAGCGCAGCAGAAGCAGAGAAGAAAGATGGTGAAGTTCTTGAAACCAAACAAAGCGGTTATCGTGCTGCAAAGCCGATACGCGGGTCGGAAGCTGTCATCATACGCACCTTCGACGATGGCACCCGCGACCGCCCCTACGGCCACTGCCTCGTCGCCGGGATCAAGAAGTACCCTTCGAAGGTTGTGAAGAGGGACTCCGCCAAGAAGACGGCGAAGAAGTCGCACGTCAAGGCGTTCGTTAAGATGGTTAACTACCAACACGTGATGCCCACGCGCTACATGCTTGACGTGGATTTGAAGGACGCCGTCACAGTCGAGTCTCTTCAGGCGAAGGACAAGAAGGTTGCGGCGCTTAAAGAGACCAAGAAGAGGCTCGAGGAGAGATTCAAGACTGGCAAAAATTGTTGGTTCTTTACCAAGCTCAGATTCTAA 573 0.5218 MLPPQKRLAPDCCRTFLTVWAPTESSRNCLSTHAAGFATSSINKNKESAAEAEKKDGEVLETKQSGYRAAKPIRGSEAVIIRTFDDGTRDRPYGHCLVAGIKKYPSKVVKRDSAKKTAKKSHVKAFVKMVNYQHVMPTRYMLDVDLKDAVTVESLQAKDKKVAALKETKKRLEERFKTGKNCWFFTKLRF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02706 190 SUPERFAMILY Translation proteins SH3-like domain 73 190 IPR008991 -
Aip01g02706 190 PANTHER 60S RIBOSOMAL PROTEIN L27 74 190 - -
Aip01g02706 190 PANTHER 60S RIBOSOMAL PROTEIN L27 74 190 IPR001141 GO:0003735|GO:0005840|GO:0006412
Aip01g02706 190 ProSitePatterns Ribosomal protein L27e signature. 179 190 IPR018262 GO:0003735|GO:0005840|GO:0006412
Aip01g02706 190 Coils Coil 155 175 - -
Aip01g02706 190 CDD KOW_RPL27 75 143 IPR041991 -
Aip01g02706 190 Pfam Ribosomal L27e protein family 107 190 IPR001141 GO:0003735|GO:0005840|GO:0006412
Aip01g02706 190 Gene3D - 69 190 IPR038655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02706 Aip-Chr1 127869109 127871491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02706 75 190 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 75.000 6.17e-63 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02706 K02901 - gmx:100793982 207.608