Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02684 ATGGGAATCTCTTGGAGCAACACCAACAGTAACAGTAACAGAAGAAGAAGAAACAATTACCCACCACCTTTTCCTCCTCCGTACTACTACTCTTCTGATGCTCATCCTCCGCAGCTTCCACCGCCGCCGCCGCCTTCTCAGCCCCCACCGCCGCAAGGCTATTACTTTCCCCCAACCAACCCTTCCACCACTCCCTACGTCGGTACCCATCCTCTGCCTCCTGCTCCTCCTCCTCAGACCCATTCCTTCTATTACTCAAATGGCTACGCCACCCCTACCGCCGCCGCCACCACCAACGCTCCTAACTATGCCAATCGCCTTCACTACCACCCTTACTATGCAAATCAGGGTGCTCCCGCCTGGGCCCCTGTTCGCCCCCCCGTTGCTGCTGCCGCCGCCGCAGCTCCACCGCCCTATGTCGACCATCAAACCACTAAGAAGATTAGGAACGACGTGAACTTGCATAAAGATACTTTGCGCCTTGAGATTGACGAGCTCAACCCTGATCACCACTTGGTTTCTTTCGTTTTTGATGCCCTCTTTGATGGCAGATTTACTATCTACTACTTAGCCAAAGAAGAAGAAAAGTGTAGGTTTATTCCACTATATCCCGATGCATTTGCGCCGATCTCATTCCCCTTTCAAAAAGGAGTTGGCCAGAAATTTTGTCAGCCTCCTGGAACGGGCATTGACCTTGGTTTCTTTGAGTTAGAGGATCTTGCAAAGCCCTCACCTGAAGAAGATCTGTTTCCCCTTGTAATATGTGCTGAAACAAGTATGAGAACTTCAGAAGATGAAACTTCTGATGATTCCACAATTGATGCATCTCCTCACATGCAAATAACTCAAGCTGTCTTAGTGAAAAGCAACAGTATTGGTCCTTTCGAGGTAAAAGTCATTAGGCAGATTCTCTGGATTGATGGAGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGTGGCTCAACAGCTGCAGATTTTGATGATAATGATCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCAAAGGACACTGCTGTCTTACCTTGCCGACATATGTGTATGTGCAGCGAGTGTGCAAAAGCATTACGGCTTCAATCCAATAAGTGCCCAATATGCCGCCAACCTATTGAGGAGCTCATGGAAATCAAGATAAACAATGATGACAAATGA 1179 0.4792 MGISWSNTNSNSNRRRRNNYPPPFPPPYYYSSDAHPPQLPPPPPPSQPPPPQGYYFPPTNPSTTPYVGTHPLPPAPPPQTHSFYYSNGYATPTAAATTNAPNYANRLHYHPYYANQGAPAWAPVRPPVAAAAAAAPPPYVDHQTTKKIRNDVNLHKDTLRLEIDELNPDHHLVSFVFDALFDGRFTIYYLAKEEEKCRFIPLYPDAFAPISFPFQKGVGQKFCQPPGTGIDLGFFELEDLAKPSPEEDLFPLVICAETSMRTSEDETSDDSTIDASPHMQITQAVLVKSNSIGPFEVKVIRQILWIDGVRYELRELYGIGSGSTAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPIEELMEIKINNDDK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02684 392 MobiDBLite consensus disorder prediction 19 58 - -
Aip01g02684 392 Pfam Zinc finger, C3HC4 type (RING finger) 335 381 - -
Aip01g02684 392 MobiDBLite consensus disorder prediction 1 84 - -
Aip01g02684 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 386 IPR013083 -
Aip01g02684 392 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 391 - -
Aip01g02684 392 SMART ring_2 337 375 IPR001841 -
Aip01g02684 392 ProSiteProfiles Zinc finger RING-type profile. 337 376 IPR001841 -
Aip01g02684 392 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 336 376 IPR045195 -
Aip01g02684 392 MobiDBLite consensus disorder prediction 1 18 - -
Aip01g02684 392 PANTHER MAHOGUNIN 1 391 IPR045194 GO:0061630
Aip01g02684 392 SUPERFAMILY RING/U-box 336 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02684 Aip-Chr1 127564679 127568097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02684 99 392 C3H Transcription Factor Family AT3G06140 57.285 3.97e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02684 - - adu:107465273 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02684 01 127564679 127568097 Aip01g02684 01 127564679 127568097 ECH