Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02680 ATGGATGATCTCTCCCTCCTCCTCCGCCTCTCCTCCGATGATCTCACATTGATTCCTAAAGGCTTTGAAGTAATTGGAGCGCTTGCTTACGGAGCCAGCGCCGACGCTCAAGCGGCAGTTCATGCTGCTCGCAGACTGAGGAAGCTTCTATACGGTGAAGAGGAAGGGGATAATCGACCGGTGATCGGAACAGTCGCCGCCGGTTCCGGCGAGCTAAAATTTTTTGTGTCGGAGAGTGGAAAATTGAATAGCCTCGAAGAGGTTGATTCAGTTGTTGAAGAAGAACATTCGGAGAAATGTGTGGGAGAATGGTTGCTTGATTCGTTTTTTGCAGTGAAAATATATGGGAAATGTTGTGATTTTTGGTTTCAGATACATGAAGAGGCTAGGAAGTTTGCATATCAAACAGGGGTTAAGGTGGTTATTGCTTATGGCGGAGCTCCAATAAACCATCAGCTACGAGATCTTGAGAAGGGGGTGGACATTCTCGTCGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATCAGATATATTGCACTAGATGAGGCAGATAAGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTTGAACAAATGGATATGCCCCCTCCAGATGTAAGACAGACTATGCTATTCAGTGCCACATTTTCTAAAAAGATACAGGTTTAG 705 0.4539 MDDLSLLLRLSSDDLTLIPKGFEVIGALAYGASADAQAAVHAARRLRKLLYGEEEGDNRPVIGTVAAGSGELKFFVSESGKLNSLEEVDSVVEEEHSEKCVGEWLLDSFFAVKIYGKCCDFWFQIHEEARKFAYQTGVKVVIAYGGAPINHQLRDLEKGVDILVATPGRLVDLLERARVSLQMIRYIALDEADKMLDMGFEPQIRKIVEQMDMPPPDVRQTMLFSATFSKKIQV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02680 234 Pfam DEAD/DEAH box helicase 124 232 IPR011545 GO:0003676|GO:0005524
Aip01g02680 234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 232 IPR027417 -
Aip01g02680 234 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 234 IPR014001 -
Aip01g02680 234 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52C 121 233 - -
Aip01g02680 234 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 121 233 - -
Aip01g02680 234 SMART ultradead3 6 234 IPR014001 -
Aip01g02680 234 Gene3D - 122 234 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02680 Aip-Chr1 127491587 127494116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02680 124 227 Eukaryotic Initiation Factors Gene Family AT3G13920 39.423 5.31e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02680 K11594 - ahf:112721994 374.4