Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02676 ATGCCCACTTCCGACGACTGCTCCGATGACGCCTGCAGCATTTGTCTTGAACCCTACACCGCCAACGACCCCGCCACTATTACCAGTTGCAAACATGATTATCATCTGCATTGTATTATTGAATGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAGTTACTTAGCTTAAAAGACCCCACCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAACGCTTAATATCCAGAAATGAACATTCATCTTCATACGCCAGCTCTCCTAGTCCCCTTGAACGACTCAATGATGATCATGATTATCCTTGTTCAGATGACTCTGATCTTGATGAGCAACTTATGCAACACCTAGTTGCTACTGCAGCAAGCACAACTGGTCATGTTCACAGACGAAAAACGCAGAGATATTCTGGTGCAGGTCCATCAGAGGTTCTTGTTTCAAATTATTCTATTCCAGCTTCTAGGATTCAGCCACCATCTGAGGGTAGTGTATCATCATCTTCTGAGAGTGAAGTCTCTTTAAAGCCCAGCTGGCAACCACTTGAGAGTGATAGGAGAGTGAACACTTCTGAAATGTTCTCCTTCCCCAAGTCCATCAAGTCCAAATTTTCTTCTGCTTCGGCAAGATATAAGGAATCAATTTCAAAAAGCACTCGAGGCCTTAAAGAGAAGTTGATTGCTCATAATGCCTCAGTGAAAGAGCTCAGTAAAGGTGTTCGGCGTGAGATGAATGTAGGCATTGCTGGTGTTGCAAAGATGATCGAACATCTTGATCTTTCGTCGAAACGGTCAAGTACCATCAGGCCAGTCAATGGTAGGGGCATCTCTATCATCCCCTTCAAAGGGAAGTCTGTCCAGCAGAATAATTCCATTGAGCAGCAGCAATCTGGAGTTTTGGTTTGTCATATTAGTTCAGACTCTCCATCTCTTGTTCCTCCTCCAACTCCAAGAGTTCAGGAGTGA 966 0.4472 MPTSDDCSDDACSICLEPYTANDPATITSCKHDYHLHCIIEWSQRSKECPICWQLLSLKDPTSQELLAAVEAEKRLISRNEHSSSYASSPSPLERLNDDHDYPCSDDSDLDEQLMQHLVATAASTTGHVHRRKTQRYSGAGPSEVLVSNYSIPASRIQPPSEGSVSSSSESEVSLKPSWQPLESDRRVNTSEMFSFPKSIKSKFSSASARYKESISKSTRGLKEKLIAHNASVKELSKGVRREMNVGIAGVAKMIEHLDLSSKRSSTIRPVNGRGISIIPFKGKSVQQNNSIEQQQSGVLVCHISSDSPSLVPPPTPRVQE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02676 321 Pfam Ring finger domain 11 52 IPR001841 -
Aip01g02676 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 4 309 - -
Aip01g02676 321 ProSiteProfiles Zinc finger RING-type profile. 12 52 IPR001841 -
Aip01g02676 321 MobiDBLite consensus disorder prediction 78 100 - -
Aip01g02676 321 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 4 309 - -
Aip01g02676 321 SMART ring_2 12 52 IPR001841 -
Aip01g02676 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 68 IPR013083 -
Aip01g02676 321 MobiDBLite consensus disorder prediction 154 178 - -
Aip01g02676 321 SUPERFAMILY RING/U-box 7 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02676 Aip-Chr1 127454149 127456330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02676 3 60 C3H Transcription Factor Family AT5G15790 43.103 1.00e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02676 K19043 - gmx:100775754 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02676 01 127454149 127456330 Aip01g02676 01 127454149 127456330 ECH