Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02670 ATGAAAATGAAGTCCATCTTATATCCGACCCTGTTATCATTTCTGCATTGGCACGTGGCGGTGGTATCAGCTGCAAGGCTGAACATGGCTAGCGATGAATCGGCCTTGGTAGCCATGAGGGAGCATTTTAACTCCTTGGATCCCAACAATGTGCTCGCAAGCAACTGGTCTAGCAGTACCTCTGTTTGCAACTGGATTGGCGTCACCTGCGGCTCTTCCCACCGCAGAGTAACTGCCTTGAATCTCGCTTACATGGCTCTTGATGCTACCATCCCTCCGCATCTTGGAAACCTGTCATTCCTTTCTCTCTTGCTTCTTCCCAACAATAGCTTCCATGGTACTCTACCTGCTGATCTAGCTGGATTACGCAGACTGAGCATCATCAACCTCAGATTCAACAAATTCACAGGAAGCATCCCGTCCTGGTTTGAATTTCTACCCAAACTAGAATACCTGTTACTGAGAGGGAACAGTTTCTCTGGCACAGTCCCACACTTTCTGTTCAACATGACTTCCCTGCAATCGCTTGAACTTTCTGAAAACAAGTTTTGGGGTCCCTTACCTTCCAACATTTTCTTGTCTCCTTCGTTGCAATATGTGTATCTTACTCACAACCAAATTTCAGGAGCTATCCCTTCAGCTATCATCAACAGTTCGTTACTGCAGTTTATTGTCCTCGACTACAACCACCTATCCGGACAACTGCCGGAGAACATCTTCCACCATCTTCCAAACTTGAAAGGGCTTTACGTGACTAGTAATTCCTTATCCGGTGAACTTCCATGCAGTTTGTTCGATTGCAAGCAACTGCAATTTTTATCCTTATCCTACAACACCTTCGGTGGAAACATACCATCTGCCATCGGGAATTTGACAAGCCTCAAAGAGATCTATCTTGGCCATAACAATTTCAGAGGTGCAATACCATATGAGTTTGGTAATCTACGTAGTTTAGAGATTCTGAGTCTTCCTTTCGCCAATGTGAGTGGCTACATTCCGCCGTCAATCTATAATATTTCTATCCTACGGGTAATTACTGTTACTGGAAATCATTTATCAGGCAGCCTCCCAGCAAGCCTAGGCTCCATGCTTCCAAAACTTGTTGGGCTGTACATGGGGATTAATTATCTCAGTGGAAGAATCCCAAGCTCCTTGTGCAATGCCACTATGCTTAATATCATAGATTTGTCTAACAATTCATTTTCTGGATACATTCCAGACATTTTTGGCAGCTTAAGAAGTCTCCAGTGGCTCAATCTTGGTGCAAATAATTTGACAAGTGATTCATCCGATTCAGAGCTAAGCATTATAAATTCTTTGACAAATTGTAGATTTCTCAAAACCTTGATATTTTATGAAAATCCATTGGATTCTATTCTTCCAATATCGGTAGGAAACCTTTCTACTTCTCTGGCCGACTTGGATCTTAAGGGTTGTTCAATGAGAGGCACCATTCCAGCAAGTATTGGCAACTTGAGCAGCTTGATAAACCTTGACCTTGGTGATAATAATTTTGTTGGAACCTTTCCTATTAGCATAGGGAAATTAATAAAGCTACAAGGCCTCTTTTTAGATGACAACCAATTGGAAGGATTTGTTCCGAATCAATTGTGTCAACTAACGAGCTTGTATTCATTTACCGTTAAAAGCAACAAGTTCTCTGGCCCTATACCTTCTTGCTTAAGCAATCTTACCTCATTAAGATGGCTTCGGCTTTCTTCAAATAAATTCAACTCAATACCTTCCACCTTGTGGGGGCTGTCCGATTTATTGCTTTTAGACTTATCTTCCAATAATTTAAGTGGATATCTCCCATTAGATAGTGGAAATCTAAAAGCCATAAGTTGGATTTATTTATCAGGAAATCAATTTTCAGGTAGCATCCCAAGAAGCCTCAGCAATCTTAGGAATTTGGTTCTTCTTACCTTAGCAAGAAACAAATTTGAAGGGCCCATTCCAGAATCATTTGGTCGTATGGTAAGTTTGGAACTCCTTGATTTATCAGAAAATAACTTGTCTGGTGTCATTCCCAAAACATTGGAGGCACTTGTATATCTGAAATATTTCAATGTTTCTCACAATAAGTTAAAAGGAAAAATCCCTGATGGAGGACCTTTTGCAAACTTCTCAGCTCAGTCGTTCATGGGGAATAAAGGATTATGTGGTGCTCCACGTTTCCAGTTTTCGGAATGTAAAATTGAAAAATCCAGAAGATGGAATGCACATATTGTGTTGACATATATTTTACCTGCAGCAATAGTTGCCACCCTTCTTGTGGCATTCCTTTGCATCCTAAAATTCCGGAAGCACAAGGTGGTCAACAATTCAGAGACGAATCAATCAGGAGCAAGATGGAGAAGAATATCATACTATGAAATTCAGCAAGCAACAGATAGGTTCAATGATGGCAACTTGCTTGGTGTAGGGAGTTTTGGAAGAGTGTATAAAGGAGTACTCTCAGATGGGACGAATGTTGCAGTGAAAGTGTTTAATCTGGGACTAGAAGGAGCATTCAGGAGTTTCGATGCTGAATGTGAGATATTGCGCAGTGTCCGCCATCGAAACTTAACCAAAATCATTAGCAGCTGCAGCAACATGGACTTCAAGGCATTGATCCTAAGCTACATGCCTAATGGGAGTTTAGAGAGGTGGCTACACTCGGAACACCATGGCTTGAGTATGATCCAGAGGCTAAACATAATGATAGATGTTGCAGAAGCAATGGATTACCTGCATAATGGTGGTTCTGTACCAATTATACACTGTGATTTGAAACCCAGCAACATATTACTAGATGAAGACATGGTTGCCCACGTGACTGATTTTGGCATTGCAAAATTGCTGAGTGGGGATGACTCCATCACTCAAACCATGAATCTAGCCACAATAGGCTATATGGCCCCTGAATATGGACTTGAGGGAAGAGTGTCTAGGCAAGGTGATGTGTATAGCTATGGAATTTTACTTATGGAGACCTTCACACAGAAAAAACCCACTGATGAAATGTTTGTGGGAGAGTTTAGCATCAAAGAGTGGGTGAAAATGTCATGCCCTGATTCACTACTTGATATCGTTGATGCAAAATTATTGGTGGAAGAAGGAGAAACAGATACTAAACAGGACTGCTTGTTGTCTATAATGACTTTAGCTCTGAATTGCTCAGCTGAGTCTCCGGGTGAAAGGACAAGAATGAAAGACGCTATGAATGCTCTTAACAAGATTAAAAGATTACTCTTGAACTAA 3243 0.4123 MKMKSILYPTLLSFLHWHVAVVSAARLNMASDESALVAMREHFNSLDPNNVLASNWSSSTSVCNWIGVTCGSSHRRVTALNLAYMALDATIPPHLGNLSFLSLLLLPNNSFHGTLPADLAGLRRLSIINLRFNKFTGSIPSWFEFLPKLEYLLLRGNSFSGTVPHFLFNMTSLQSLELSENKFWGPLPSNIFLSPSLQYVYLTHNQISGAIPSAIINSSLLQFIVLDYNHLSGQLPENIFHHLPNLKGLYVTSNSLSGELPCSLFDCKQLQFLSLSYNTFGGNIPSAIGNLTSLKEIYLGHNNFRGAIPYEFGNLRSLEILSLPFANVSGYIPPSIYNISILRVITVTGNHLSGSLPASLGSMLPKLVGLYMGINYLSGRIPSSLCNATMLNIIDLSNNSFSGYIPDIFGSLRSLQWLNLGANNLTSDSSDSELSIINSLTNCRFLKTLIFYENPLDSILPISVGNLSTSLADLDLKGCSMRGTIPASIGNLSSLINLDLGDNNFVGTFPISIGKLIKLQGLFLDDNQLEGFVPNQLCQLTSLYSFTVKSNKFSGPIPSCLSNLTSLRWLRLSSNKFNSIPSTLWGLSDLLLLDLSSNNLSGYLPLDSGNLKAISWIYLSGNQFSGSIPRSLSNLRNLVLLTLARNKFEGPIPESFGRMVSLELLDLSENNLSGVIPKTLEALVYLKYFNVSHNKLKGKIPDGGPFANFSAQSFMGNKGLCGAPRFQFSECKIEKSRRWNAHIVLTYILPAAIVATLLVAFLCILKFRKHKVVNNSETNQSGARWRRISYYEIQQATDRFNDGNLLGVGSFGRVYKGVLSDGTNVAVKVFNLGLEGAFRSFDAECEILRSVRHRNLTKIISSCSNMDFKALILSYMPNGSLERWLHSEHHGLSMIQRLNIMIDVAEAMDYLHNGGSVPIIHCDLKPSNILLDEDMVAHVTDFGIAKLLSGDDSITQTMNLATIGYMAPEYGLEGRVSRQGDVYSYGILLMETFTQKKPTDEMFVGEFSIKEWVKMSCPDSLLDIVDAKLLVEEGETDTKQDCLLSIMTLALNCSAESPGERTRMKDAMNALNKIKRLLLN 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02670 1080 Coils Coil 1064 1080 - -
Aip01g02670 1080 SUPERFAMILY L domain-like 54 357 - -
Aip01g02670 1080 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 148 285 - -
Aip01g02670 1080 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 8 146 - -
Aip01g02670 1080 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 267 1075 - -
Aip01g02670 1080 ProSiteProfiles Protein kinase domain profile. 800 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02670 1080 Gene3D Ribonuclease Inhibitor 29 192 IPR032675 -
Aip01g02670 1080 SUPERFAMILY RNI-like 347 701 - -
Aip01g02670 1080 SMART LRR_typ_2 291 314 IPR003591 -
Aip01g02670 1080 SMART LRR_typ_2 635 658 IPR003591 -
Aip01g02670 1080 SMART LRR_typ_2 243 267 IPR003591 -
Aip01g02670 1080 SMART LRR_typ_2 412 435 IPR003591 -
Aip01g02670 1080 SMART LRR_typ_2 564 587 IPR003591 -
Aip01g02670 1080 SMART LRR_typ_2 516 540 IPR003591 -
Aip01g02670 1080 SMART LRR_typ_2 170 194 IPR003591 -
Aip01g02670 1080 SMART LRR_typ_2 659 682 IPR003591 -
Aip01g02670 1080 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Aip01g02670 1080 Pfam Leucine rich repeat 542 600 IPR001611 GO:0005515
Aip01g02670 1080 Pfam Leucine rich repeat 123 183 IPR001611 GO:0005515
Aip01g02670 1080 Pfam Leucine rich repeat 636 696 IPR001611 GO:0005515
Aip01g02670 1080 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 148 285 - -
Aip01g02670 1080 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 267 1075 - -
Aip01g02670 1080 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 8 146 - -
Aip01g02670 1080 Gene3D Transferase(Phosphotransferase) domain 1 876 1078 - -
Aip01g02670 1080 Gene3D Ribonuclease Inhibitor 193 430 IPR032675 -
Aip01g02670 1080 Gene3D Ribonuclease Inhibitor 431 739 IPR032675 -
Aip01g02670 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 919 931 IPR008271 GO:0004672|GO:0006468
Aip01g02670 1080 SUPERFAMILY Protein kinase-like (PK-like) 775 1071 IPR011009 -
Aip01g02670 1080 SMART serkin_6 800 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02670 1080 Pfam Protein kinase domain 801 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02670 1080 ProSiteProfiles Leucine-rich repeat profile. 414 435 IPR001611 GO:0005515
Aip01g02670 1080 Gene3D Phosphorylase Kinase; domain 1 770 875 - -
Aip01g02670 1080 ProSitePatterns Protein kinases ATP-binding region signature. 806 828 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02670 Aip-Chr1 127388633 127392091 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02670 612 717 Receptor kinase-like Gene Family AT3G47570 34.579 1.18e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Aip01g02670 Pkinase 8.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02670 - K13420 aip:107613554 1981.45