Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02668 ATGAAAATGAAGTCCCTCTTATATCCGACCCTGTTGTCATTGCTGCATTGGCACGTGGCGGTGGTATCAGCTGCAAGGCTGAACATGGCTAGCGATGAATCGGCCTTGGTTGCCATGAGGGAGCATTTTAACTCCTTGGATCCCAACAATGTGCTCGCAAGCAACTGGTCTAGCAGTACCTCTGTTTGCAACTGGATTGGCGTCACCTGCGGCTCTTCCCACCGCAGAGTAACTGCCTTGAATCTCTCATACATGTCTCTTGATGCCACCATCCCTCCGCATCTTGGAAACCTGTCATTCCTTCTGGCCTGGCATCTTCCCAACAATAGCTTCCATGGTACTCGTAGACTGAGCATCATCAACCTTAGATTCAACAAATTCACCGGAAGTATCCCCTCCTGGTTTGAATCTCTACGGAAACTAAAACACCTGTTATTGGCAGGCAATAGTTTCACTGGCACAGTCCCACACTTCCTGTTCAACATGAGTTCCCTGCAATCGCTTGAACTTTTTAAAAACAAGTTTTGGGGTCCCTTACCTTCCAACATTTTCTTGTCTCCTTCTTTGCAATATCTGTATCTTACTTACAACCAAATTTCAGGAGCTATCCCTTCAGCTATCATCAACAGTTCGTTTCTGCAGGTTATTGACCTCGACTACAACAACCTATCCGGACAACTGCCGGAGCGCATCTTCCACCATCTACCAAACTTGAAAGAGCTTCACGTGACTAGTAATGCCTTATCCGGTGAAAAATTGCTGAGTGGGGATGACTCCATCACTCAAACCATGAATCTAGCCACAATAGGCTATATGGCCCCTGAATATGGACTTGAGGGAAGAGTGTCTAGGCAAGGTGATGTGTATAGCTATGGAATTTTACTTATGGAGACCTTCACACAGAAAAAACCCACTGACGAAATGTTTGTGGGAGAGTTTACCATCAAAGAGTGGGTGAAAATGTCATGCCCTGATTCACTACTTGATATCGTTGATGCAAAATTATTGGTGGAAGAAGGAGAAACGGATACTAAACGGGACTGCTTGTTGTTTATAATGACTTTAGCTCTGAATTGCTTAGCTGAGTCTCCGGGTGAAAGGACAAGAATGAAAGACGCTATGAATGCTCTTAAGAAGATTAAAAGATTACTCTTGAACTAA 1161 0.4453 MKMKSLLYPTLLSLLHWHVAVVSAARLNMASDESALVAMREHFNSLDPNNVLASNWSSSTSVCNWIGVTCGSSHRRVTALNLSYMSLDATIPPHLGNLSFLLAWHLPNNSFHGTRRLSIINLRFNKFTGSIPSWFESLRKLKHLLLAGNSFTGTVPHFLFNMSSLQSLELFKNKFWGPLPSNIFLSPSLQYLYLTYNQISGAIPSAIINSSFLQVIDLDYNNLSGQLPERIFHHLPNLKELHVTSNALSGEKLLSGDDSITQTMNLATIGYMAPEYGLEGRVSRQGDVYSYGILLMETFTQKKPTDEMFVGEFTIKEWVKMSCPDSLLDIVDAKLLVEEGETDTKRDCLLFIMTLALNCLAESPGERTRMKDAMNALKKIKRLLLN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02668 386 Gene3D Transferase(Phosphotransferase) domain 1 251 383 - -
Aip01g02668 386 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Aip01g02668 386 Pfam Leucine rich repeat 187 248 IPR001611 GO:0005515
Aip01g02668 386 Gene3D Ribonuclease Inhibitor 28 116 IPR032675 -
Aip01g02668 386 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 252 381 - -
Aip01g02668 386 SUPERFAMILY L domain-like 35 251 - -
Aip01g02668 386 Gene3D Ribonuclease Inhibitor 117 182 IPR032675 -
Aip01g02668 386 Gene3D Ribonuclease Inhibitor 183 250 IPR032675 -
Aip01g02668 386 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Aip01g02668 386 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 6 139 - -
Aip01g02668 386 Pfam Protein tyrosine and serine/threonine kinase 257 375 IPR001245 GO:0004672|GO:0006468
Aip01g02668 386 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 139 - -
Aip01g02668 386 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 139 250 - -
Aip01g02668 386 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 252 381 - -
Aip01g02668 386 SUPERFAMILY Protein kinase-like (PK-like) 261 380 IPR011009 -
Aip01g02668 386 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 139 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02668 Aip-Chr1 127372790 127374065 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02668 267 382 Receptor kinase-like Gene Family AT3G47570 41.880 1.64e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Aip01g02668 PK_Tyr_Ser-Thr 3.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02668 - K13420 ahf:112722956 753.436