Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02665 atgagcccaaatccttcCACAAATCAGCCACCTCCAACCCCAACCACCTCATGTGCCCCTGACTCCCTCTTCCACCACCACCTACTCTGCCCCTCCTCTCCTTGCCCCATCTTCCTCCCTCTCTACCTCTGCCCTTTTCTTCTTCCTTCGTCCTTTTTTCTTTCCATTCTTCTTCCTCGGTCCCTGCCTCCATCACCGCCGCACAGCCGCGCCTCCGTCAGCCACCATCAACGCCGACGACCTCCTCCTTCCTCTCGCACCAGCACCGCTTCCAGCAATAACCCATCCGGTGAGGCGGATCCAAATTCCTGCGGCGGAGACACTGTCACCGGCCAGAATCGCAAGTTCTGTCCGCTGCCACTTACGCCGCGATTGCAGCAGAGTTCCAAGTCCCGGTCGAGCCTGCCGCCCCTCCAGCCGCTTTCGATAGCCCGGCGGAGCCTCGATGAGTGGCCGCAGGCGAGCTCAGATGACATTGGGGAGTGGTTGCCCCCACAGCCGCCGTTGACCACCGGTGGCGCCATGAGAGGTAACCCTGGTGAAAGGTTGAAACTTGATCTCTCCTCAATTCAGATGAACAATGATAGGAATTGCAATAATGGCAGTAATAGTAGTGGTAATAATAATAGTTGTAACAATAATGGTGTTAGTGGACTCTTGAAGAGGGATAGAATTGCATTTTTTGATAAGGAGTGTTCAAAGGTTGCTGAACATGTTTACCTTGGTGGTGATGCTGTTGCTAAGAATAGGGATATATTGAAACAGAATGGAATCACTCATATCTTGAACTGTGTTGGTTTTGTGTGCCCCGAGTATTTTAAGGCTGATTTTGTGTATAGAACATTGTGGCTTCAGGATAGTCCTTCAGAGGATATTACTAGTATCTTGTATGATGTGTTTGATTACTTTGAGGATGTTATGGAACAAGGTGGTAGGGTGTTTGTGCACTATTGTCAAGGTGTGTCTAGGTCTACTTCGTTGGTGATTGCATACCTCATGTGGAGAGAAGGACAGAGCTTTGATGATGCTTTTCAGTTGGTGAAGGCTGCAAGGGGTATTGCCGATCCGAATATGGGGTTTGTTTGCCAGTTGTTGCAGTGCCAGAAGAGGGTGCATGCAGTTCCTCTTAGTCCTACCTCTTTGCTTAGGATGTATAGGAAGGCTCCACACTCGCCTTATGATCCTTTGCATCTCGTCCCCAAAATGTTAACGGATCCTTCGCCTTCCGCATTGGACTCCAGGGGAGCTTTTTTTGTACATATTCCCACTGCAATATTTGTTTGGTGA 1287 0.4911 MSPNPSTNQPPPTPTTSCAPDSLFHHHLLCPSSPCPIFLPLYLCPFLLPSSFFLSILLPRSLPPSPPHSRASVSHHQRRRPPPSSRTSTASSNNPSGEADPNSCGGDTVTGQNRKFCPLPLTPRLQQSSKSRSSLPPLQPLSIARRSLDEWPQASSDDIGEWLPPQPPLTTGGAMRGNPGERLKLDLSSIQMNNDRNCNNGSNSSGNNNSCNNNGVSGLLKRDRIAFFDKECSKVAEHVYLGGDAVAKNRDILKQNGITHILNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVMEQGGRVFVHYCQGVSRSTSLVIAYLMWREGQSFDDAFQLVKAARGIADPNMGFVCQLLQCQKRVHAVPLSPTSLLRMYRKAPHSPYDPLHLVPKMLTDPSPSALDSRGAFFVHIPTAIFVW 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02665 428 Gene3D Protein tyrosine phosphatase superfamily 205 373 IPR029021 -
Aip01g02665 428 MobiDBLite consensus disorder prediction 122 139 - -
Aip01g02665 428 MobiDBLite consensus disorder prediction 64 139 - -
Aip01g02665 428 SMART dsp_5 231 370 IPR020422 GO:0006470|GO:0008138
Aip01g02665 428 Pfam Dual specificity phosphatase, catalytic domain 239 369 IPR000340 GO:0008138|GO:0016311
Aip01g02665 428 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 290 351 IPR000387 GO:0016311|GO:0016791
Aip01g02665 428 ProSiteProfiles Dual specificity protein phosphatase domain profile. 231 373 IPR020422 GO:0006470|GO:0008138
Aip01g02665 428 CDD DSP 232 366 - -
Aip01g02665 428 MobiDBLite consensus disorder prediction 153 181 - -
Aip01g02665 428 PANTHER MKPA PROTEIN 84 428 - -
Aip01g02665 428 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 84 428 - -
Aip01g02665 428 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 223 372 IPR029021 -
Aip01g02665 428 MobiDBLite consensus disorder prediction 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02665 Aip-Chr1 127359978 127361264 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02665 88 267 Protein tyrosine phosphatase (PTP) family AT3G55270 51.381 2.97e-46 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02665 - - aip:107613560 689.108