Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02661 ATGGGGAATAAAGGATTATGTGGTGCTCCATGTTTCCATTTTTCGGAATGTAAAATTGAAAAATCCCGAAAATGGAATGCACATATTGTGTTGACATATATTTTATCTGCAGCAATAGTTGCCACCCTTCTTGTGGCATTCCTTTGCATCCTAAAATTCCGGAAGCACAAGGTGGTCAACAATTCAGAGGTGGATCAATCGGGAGCAAGATGGAGAAGAATATCATACTATGAAATTCAGCAAGCAACAGATAGGTTCAATGATGGCAACTTGCTTGGTGTAGGGAGTTTTGGAAGAGTGTATAAAGGAGTACTCTCATATGGGACGAACGTTGCAGTGAAAGTGTTTAATCTGGGACTAGAAGGAGCATTCAGGAGTTTCGATGCTGAATGTGAGATATTGCGCAGTGTCCGCCATCGAAACTTAACCAAAATCATTAGCAGCTGCAGCAACATGGACTTCAAGGCATTGATCCTAAGCTACATGCCTAATGGGAGTTTAGAGAGGTGGCTTCACTCGGAACACCATGGCTTGAGTATGATCCAGAGGCTAAACATAATGATAGATGTTGCAGAAGCAATGGATTACCTGCATAATGGTGGTTCTGTACCAATTATACACTGTGATTTGAAACCCAGCAACATATTACTAGATGAAGACATGGTTGCCCACGTGACTGATTTTGGCATTGCAAAATTGCTGAGTGGGGATGACTCCATCACTCAAACCATGAACCTAGCCACAATAGGCTATATGGCCCCTGTTCCTCACGGAGATTCCAATACTTATCGAGCTCCGGCACCGGCACCGCCCTCGCCGATTCCTGATGCGTATCTGCTCCAGTCCGGTGATCACCCAGGGCTCGTGCTTGTTTCACAACCCCTACAAGAAGAAAACTACGCTTCTTGGTGTAGATCGATGAGACTTGCGTTGAGTGGAAAACTCAAAATCTGCTTCATCGATGGCTCCCTTTCGAAGCCAGATCCAGTTCTTGACCCTGCACTCGCTGAATCGTGGCAGTGCACGAACGACATCATCACTACGTGGTTTTCGAATGCGATCTCCAAGGATATTGCGGCAAGCGTCATCTATGCTGGATCCGCGGCTTTACTTTGGCAAGATTTGGAGACTCGCTTCTCTCAGAGCAACGCACCTCGCATCTTTGAGCTGAAGAGGTCACTCATGTCTCTGACTCAAGGTTCTCTCTCGGTCTCACAGTATTTTACAAAGTTGAAGATACTTTGGGAAGAACTCAACACCTTCAAGCCATTAATCCTGTTGTCAGATCCACTGCCTCCGATTGGAAAAGTCTTTTCTCTTGTGTTGCAAGAGGAGAAGCAGAGAGCACTCACCTCTCCAAGCCAACATATGGCCTTTGCTGTTAAACAGTCTCCACGACCTACCTCTCCTTCTGGCCCCAAGGTGAAAGGGAGGAAAGATCGTCCACTCTGTGCTCATTGTGGGTTGTTGGGACATACTGAAGATAAATGTTATTGTCTCCATGGATATCCTCCTGGATATTCCCAAAACAAGCCTGTGAATGCCAAATCCCAAGTGCACCATGTTGCCAAGGTCGCTCATGATCAAGAAAGCCAAGATCCATCTCCAACATCCAGCTTTTCACCTACAGCGGCTCAGTACAACCAATTGATGACTCTCTTGCAAACTCAGCAAGCTCTTCAAGACATTGAACCTGAAATTTGTGCAGGTGAAGTGTTTTCCTCATGTTATTCGAATCAAATGGCAGAGGTTAGTTCTTGGATAGTTGATTCCGGAGCCACCACTCACATCACTAATTCTTTTAAATTTTTGGAAAATGCTAAACCTCTTACAAATCATTTTGTTGCTTTGCCTGACCATACCAAAATTCGTGCCTTAGCTATTGGTAATGTTATTCTTAATTCTTCTTTGATCCTTTACAATGTCATATTCATTCCCTCTTTCCGAGTTAATTTGATTTCTGTTAGTTCTTTGTTGAAATTGTCTAACTGCACAGTTCTCTTTTCTGACTTAGCCTTCATCATACAGGACAGGACCTCCAAGAAGGTGATTGGCAGAGGTGATGAAACTGATGACCTGTTTCTGCTACAATCACCCTTCACAGTTCATACTAGGAGTTCTGTTCAAAGCTGTCGATCAGTAACCAATGTTGATAGTACTATTTGGCATGCTCGTTTAGGTCACACTTCAGAAAAAGTCTTTAACAAATTGAGTCCTCTTTTGTCCAATAAAACTCTCAAATACAATCATTCTACTTGTGAAGTATGTCCCTTAGCTAAACTCAAGCATTTGTCTTTTTAA 2301 0.4337 MGNKGLCGAPCFHFSECKIEKSRKWNAHIVLTYILSAAIVATLLVAFLCILKFRKHKVVNNSEVDQSGARWRRISYYEIQQATDRFNDGNLLGVGSFGRVYKGVLSYGTNVAVKVFNLGLEGAFRSFDAECEILRSVRHRNLTKIISSCSNMDFKALILSYMPNGSLERWLHSEHHGLSMIQRLNIMIDVAEAMDYLHNGGSVPIIHCDLKPSNILLDEDMVAHVTDFGIAKLLSGDDSITQTMNLATIGYMAPVPHGDSNTYRAPAPAPPSPIPDAYLLQSGDHPGLVLVSQPLQEENYASWCRSMRLALSGKLKICFIDGSLSKPDPVLDPALAESWQCTNDIITTWFSNAISKDIAASVIYAGSAALLWQDLETRFSQSNAPRIFELKRSLMSLTQGSLSVSQYFTKLKILWEELNTFKPLILLSDPLPPIGKVFSLVLQEEKQRALTSPSQHMAFAVKQSPRPTSPSGPKVKGRKDRPLCAHCGLLGHTEDKCYCLHGYPPGYSQNKPVNAKSQVHHVAKVAHDQESQDPSPTSSFSPTAAQYNQLMTLLQTQQALQDIEPEICAGEVFSSCYSNQMAEVSSWIVDSGATTHITNSFKFLENAKPLTNHFVALPDHTKIRALAIGNVILNSSLILYNVIFIPSFRVNLISVSSLLKLSNCTVLFSDLAFIIQDRTSKKVIGRGDETDDLFLLQSPFTVHTRSSVQSCRSVTNVDSTIWHARLGHTSEKVFNKLSPLLSNKTLKYNHSTCEVCPLAKLKHLSF 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02661 766 Pfam Protein kinase domain 87 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02661 766 SMART serkin_6 86 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02661 766 ProSiteProfiles Protein kinase domain profile. 86 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02661 766 Pfam Retrotransposon gag protein 344 419 IPR005162 -
Aip01g02661 766 Gene3D Phosphorylase Kinase; domain 1 56 161 - -
Aip01g02661 766 Pfam GAG-pre-integrase domain 693 760 IPR025724 -
Aip01g02661 766 Gene3D Transferase(Phosphotransferase) domain 1 162 264 - -
Aip01g02661 766 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 1 254 - -
Aip01g02661 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Aip01g02661 766 ProSitePatterns Protein kinases ATP-binding region signature. 92 114 IPR017441 GO:0005524
Aip01g02661 766 PANTHER RECEPTOR-LIKE PROTEIN 55 1 254 - -
Aip01g02661 766 SUPERFAMILY Protein kinase-like (PK-like) 62 254 IPR011009 -
Aip01g02661 766 MobiDBLite consensus disorder prediction 459 479 - -
Aip01g02661 766 Pfam gag-polypeptide of LTR copia-type 283 328 IPR029472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02661 Aip-Chr1 127322325 127325124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02661 1 254 Receptor kinase-like Gene Family AT3G47570 39.789 1.73e-52 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Aip01g02661 Pkinase 3.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02661 - K13420 aip:110266922 515.768