Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02660 ATGAAAATGAAGTCCCTCTTATATCCGACCCTGTTGTCATTGCTGCATTGGCACGTGGCGGTGGTATCAGCTGCAAGGCTGAACATGGCTAGCGATGAATCGGCCTTGGTTGCCATGAGGGACCATTTTAACTCCTTGGATCCCAACAATGTGCTCGCAAGCAACTGGTCTAGCAGTACCTCTGTTTGCAACTGGATTGGCGTCACCTGCGGCTCTTCCCACCGCAGAGTAACTGCCTTGAATCTCTCATACATGGCTCTTGATGCCACCATCCCTCCGCATCTTGGAAACCTGTCATTCCTTTCTCACCTGCATCTTCCCAACAATAGCTTCCATGGTACTCTACCTGCTGATCTAGCTGGATTACGTAGACTGAGGATCATCAACCTCAGATTCAACAAATTCACAGGAAGCATCCCGTCCTGGTTTGAGTCTCTACCCAAACTAAAATACCTGTTACTGAGAGGGAACAGTTTCTCTGGCACAGTCCCACACTTTCTGTTCAACATGACTTCCCTGCAATATCTTGTACTTTCTGATAACCAGTTTTGGGGTCCCTTACCTTCCAACATTTTCTTGTCTCATTCTTTGCAATATGTGTTTCTTTCTCACAACCAAATTTCAGGAGCTATCCCTTCAGCTATCATCAACAGTTCGTTACTGCAGGTTATTGAACTCAACTACAACAACCTATCCGGACAACTGCCGGAGCGCATCTTCCACCATCTTCCAAACTTGAAAGGGCTTTACGTGACTAATAATTCCTTATCCGGTGAACTTCCACGCAGTTTGTTCGATTGCAAGCAACTGCAATCTTTATCCTTATCCTACAACACCTTCGGTGGAAACATACCATCTGCCATCGAGAATTTGACAAACCTCAAAGAGATCTATCTTGGCTATAACAATTTCAGAGGTGCAATACCATATGAGATTGGTAATCTACGTAGTTTAGAGATTCTGAGTCTTCCTTTCGCCAATGTGAGTGGCTACATTCCGCCATCAATCTATAATATTTCTACCCTACGGGTAATTAGTGTTACTGGAAATCGTTTATCAGGCAGCCTGCCAGCAAGCCTAGGCTCCATGCTTCCAAAACTTGTTGGGCTGTACATGGGTAGTAATTATCTCAGTGGAAGAATCCCAGGCTCCTTGTGCAATGCCACTATGCTTAATACCATAGATTTGGCTTTCAATTCATTTTCTGGATACATTCCAGACATTTTTGGCAGCTTAAGAAGTCTCCAGCTGCTCAATCTTGGTAAAAATAATTTGACAAGTGATTCATCCGATTCAGAGCTAAGCATTATAAATTCTTTGACAAATTGTAGATTTCTCAAAGAGTTGACATTTTCTGGAAATCCATTGGATTCCATTCTTCCAATATCGGTAGGAAACCTTTCTACTTCTCTGGTTGACTTGAATCTTAGGGGTTGTTCAATGAGAGGCACCATTCCAGCAAGTATTGGCAACTTGAGCAGCTTGATAAAACTTGACCTTGGTACTAATAATTTTGTTGGAACCTTTCCTACTAGCATAGGGAAATTAATAAAGCTACAAGGCTTCTATTTACATGACAACCAACTGGAAGGATTTGTTCCGAATCAATTGTGTCAATTAACGAGCTTGGATTCATTTGCCGTTAAAAGCAACAAGTTCTCTGGCCCTATACCTTCTTGCTTAAGCAATCTTACCTCATTGAGATGGCTTTGGCTTTCTTCAAATGAATTCAACTCAATACCTTCCACCTTGTGGGAGCTGTCCAATTTATTGCTTTTAGACTTATCTTCCAATAATTTAAGTGGATATCTCCCATTAGAGAGTGGAAATCTAAAAGCCATAAGTTGGATGTATTTATCAGGAAATCAATTTTCAGGTAGCATCCCAAGAAGCCTCAGCAATCTTATGAATTTGGCTCTTCTTACCTTAGCAAGAAACAAATTTGAAGGGCCCATCCCAGAATCATTTGGTCGTATGGTAAGTTTGGAACAACTTGATTTATCAGAAAATAACTTGTCTGGTGTCATTCCCAAAACATTGGAGGCACTTGTGTATCTGAAATATTTCAATGTTTCTCACAATAAGTTAAAAGGAAAAATCCCTGATGGGGGACCTTTTGCAAACTTCTCAGCTCAGTCGTTCATGGGGAATAAAGGATTATGTGGTGCTCCACGTTTCCATTTTTCGGAATGTAAAATTGAAAAATCCCGAAAATGGAATGCACATATTGTGTTGACATATATTTTACCTGCGGCAATAGTTGCCACCCTTCTTGTGGCATTCCTTTGCATCCTAAAATTCCGGAAGCACAAGGTGGTCAACAATTCAGAGATGAATCAATCGGGAGCAAGATGGAGAAGAATATCATACTATGAAATTCAGCAAGCAACAGATAGGTTCAATGATGGCAACTTGCTTGGTGTAGGGAGTTTTGGAAGAGTGTATAAAGGAGTACTCTCAGATGGGACAAATGTTGCAGTGAAAGTGTTTAATCTGGGACTAGAAGGAGCATTCAGGAGTTTCGATGCTGAATGTGAGATATTGCGCAGTGTCCGCCATCGAAACTTAACCAAAATCATTAGCAGCTGCAGCAACATGGACTTCAAGGCATTGATCCTAAGCTACATGCCTAATGGGAGTTTAGAGAGGTGGCTACACTCGGAATACCATGGCTTGAGTATGATCCAGAGGCTAAACATAATGATAGATGTTGCAGAAGCAATGAATTACCTGCATAATGGTGGTTCTGTACCAATTATACACTGTGATTTGAAACCCAGCAACATATTACTAGATGAAGACATGGTTGCCCACGTGACTGATTTTGGCATTGCAAAATTGCTGAGTGGGGATGACTCCATCACTCAAACCATGAATCTAGCCACAATAGGCTATATGGCCCCTGAATATGGACTTGAGGGAAGAGTGTCTAGGCAAGGTGATGTGTATAGCTATGGAATTTTACTTATGGAGACCTTCACACAGAAAAAACCCACTGACGAAATGTTTGTGGGAGAGTTTAGCATCAAAGAGTGGGTGAAAATGTCATGCCCTGATTCACTACTTGATATCATTGATGCAAAATTATTGGTGGAAGAAGGAGAAACAGTTACTAAACAGGACTGCTTGTTGTCTATAATGACTTTAGCTCTGAATTACTCAGCTGAGTCTCCGGGTAAAAGGACAAGAATGAAAGACGCTATGAATGCTCTTAAGAAGATTAAAAGATTACTCTTGAACTAA 3243 0.4129 MKMKSLLYPTLLSLLHWHVAVVSAARLNMASDESALVAMRDHFNSLDPNNVLASNWSSSTSVCNWIGVTCGSSHRRVTALNLSYMALDATIPPHLGNLSFLSHLHLPNNSFHGTLPADLAGLRRLRIINLRFNKFTGSIPSWFESLPKLKYLLLRGNSFSGTVPHFLFNMTSLQYLVLSDNQFWGPLPSNIFLSHSLQYVFLSHNQISGAIPSAIINSSLLQVIELNYNNLSGQLPERIFHHLPNLKGLYVTNNSLSGELPRSLFDCKQLQSLSLSYNTFGGNIPSAIENLTNLKEIYLGYNNFRGAIPYEIGNLRSLEILSLPFANVSGYIPPSIYNISTLRVISVTGNRLSGSLPASLGSMLPKLVGLYMGSNYLSGRIPGSLCNATMLNTIDLAFNSFSGYIPDIFGSLRSLQLLNLGKNNLTSDSSDSELSIINSLTNCRFLKELTFSGNPLDSILPISVGNLSTSLVDLNLRGCSMRGTIPASIGNLSSLIKLDLGTNNFVGTFPTSIGKLIKLQGFYLHDNQLEGFVPNQLCQLTSLDSFAVKSNKFSGPIPSCLSNLTSLRWLWLSSNEFNSIPSTLWELSNLLLLDLSSNNLSGYLPLESGNLKAISWMYLSGNQFSGSIPRSLSNLMNLALLTLARNKFEGPIPESFGRMVSLEQLDLSENNLSGVIPKTLEALVYLKYFNVSHNKLKGKIPDGGPFANFSAQSFMGNKGLCGAPRFHFSECKIEKSRKWNAHIVLTYILPAAIVATLLVAFLCILKFRKHKVVNNSEMNQSGARWRRISYYEIQQATDRFNDGNLLGVGSFGRVYKGVLSDGTNVAVKVFNLGLEGAFRSFDAECEILRSVRHRNLTKIISSCSNMDFKALILSYMPNGSLERWLHSEYHGLSMIQRLNIMIDVAEAMNYLHNGGSVPIIHCDLKPSNILLDEDMVAHVTDFGIAKLLSGDDSITQTMNLATIGYMAPEYGLEGRVSRQGDVYSYGILLMETFTQKKPTDEMFVGEFSIKEWVKMSCPDSLLDIIDAKLLVEEGETVTKQDCLLSIMTLALNYSAESPGKRTRMKDAMNALKKIKRLLLN 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02660 1080 SMART LRR_typ_2 659 682 IPR003591 -
Aip01g02660 1080 SMART LRR_typ_2 291 315 IPR003591 -
Aip01g02660 1080 SMART LRR_typ_2 412 435 IPR003591 -
Aip01g02660 1080 SMART LRR_typ_2 122 145 IPR003591 -
Aip01g02660 1080 SMART LRR_typ_2 170 194 IPR003591 -
Aip01g02660 1080 SMART LRR_typ_2 219 242 IPR003591 -
Aip01g02660 1080 SMART LRR_typ_2 516 540 IPR003591 -
Aip01g02660 1080 SMART LRR_typ_2 364 388 IPR003591 -
Aip01g02660 1080 SMART LRR_typ_2 243 267 IPR003591 -
Aip01g02660 1080 SMART LRR_typ_2 564 587 IPR003591 -
Aip01g02660 1080 SMART serkin_6 800 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02660 1080 Gene3D Phosphorylase Kinase; domain 1 770 875 - -
Aip01g02660 1080 Gene3D Transferase(Phosphotransferase) domain 1 876 1078 - -
Aip01g02660 1080 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Aip01g02660 1080 SUPERFAMILY RNI-like 346 700 - -
Aip01g02660 1080 Pfam Leucine rich repeat 269 323 IPR001611 GO:0005515
Aip01g02660 1080 Pfam Leucine rich repeat 637 696 IPR001611 GO:0005515
Aip01g02660 1080 Pfam Leucine rich repeat 196 256 IPR001611 GO:0005515
Aip01g02660 1080 Pfam Leucine rich repeat 566 624 IPR001611 GO:0005515
Aip01g02660 1080 Pfam Leucine rich repeat 123 183 IPR001611 GO:0005515
Aip01g02660 1080 Pfam Protein kinase domain 801 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02660 1080 SUPERFAMILY Protein kinase-like (PK-like) 774 1071 IPR011009 -
Aip01g02660 1080 ProSiteProfiles Protein kinase domain profile. 800 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02660 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 919 931 IPR008271 GO:0004672|GO:0006468
Aip01g02660 1080 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 266 1075 - -
Aip01g02660 1080 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 148 286 - -
Aip01g02660 1080 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 6 147 - -
Aip01g02660 1080 Gene3D Ribonuclease Inhibitor 29 194 IPR032675 -
Aip01g02660 1080 SUPERFAMILY RNI-like 78 378 - -
Aip01g02660 1080 ProSitePatterns Protein kinases ATP-binding region signature. 806 828 IPR017441 GO:0005524
Aip01g02660 1080 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 266 1075 - -
Aip01g02660 1080 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 147 - -
Aip01g02660 1080 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 148 286 - -
Aip01g02660 1080 Gene3D Ribonuclease Inhibitor 428 740 IPR032675 -
Aip01g02660 1080 ProSiteProfiles Leucine-rich repeat profile. 566 588 IPR001611 GO:0005515
Aip01g02660 1080 Gene3D Ribonuclease Inhibitor 195 427 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02660 Aip-Chr1 127278125 127281583 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02660 612 717 Receptor kinase-like Gene Family AT3G47570 33.645 4.16e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Aip01g02660 Pkinase 2.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02660 - K13420 aip:107613554 1944.09