Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02642 ATGATGCAGCCCGGACCTGGCATGGCTCCTCCACCCAGCATGGCCCAGCAGCCCAACCAGCAGTACCAGCAGCAGCAGCCATACATGATGATGCCTCCGCAGGCCCAGCCACCACAGATGTGGGCCCCCTCCGCCCAGGCTCCGACACAGTCCGTGCCTCCTTCCCAGCCCGTTCAGCCCGCCAGTGCCGATGAGGTCCGAACCCTGTGGATCGGTGATTTGCAGTACTGGATGGATGAGAACTACCTCTACACCTGTTTTGCTCACACTGGCGAGATGGCATCTGTTAAAGTAATTAGGAATAAGCAAACTAGTCAATCCGAGGGTTATGGGTTTATTGAGTTTACAAGCCGTGCTGCTGCTGAGAGAATACTACAAACATTCAATGGCACCATTATGCCAAATGGCGGGCAGAATTTCAGGTTGAACTGGGCAACCTTTAGCGCTGGTGAGAGGCGTCATGACGATAGTCCAGATTACACTATATTTGTTGGAGATTTGGCTGCAGATGTTACGGACTACCACCTTCAGGAGACATTTAGGGGTAGATACTCCTCGGTTAAGGGGGCTAAAGTTGTAATTGACAGGCTTACTGGGCGGACAAAGGGCTACGGTTTTGTTAGGTTTGCAGATGAGAGTGAGCAAGTTAGAGCTATGACGGAAATGCAGGGCGTTCTTTGTTCAACAAGACCCATGAGGATTGGACCAGCATCTAATAAAAACCCAACCACACAATCCAACAAAGCTTCATACCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATGCAAATGTTACAGATGATCACCTGCGACAAGTCTTTGGGCATTATGGAGAGTTAGTTCATGTGAAGATTCCATCCGGCAAGAGATGTGGGTTTGTGCAATTTGCTGACAGGAGTTGTGCTGAAGAGGCACTGAGAGTGTTGAATGGAACACTTTTAGGTGGCCAAAATGTTAGGCTTTCATGGGGACGGAGTCCTTCAAACAAACAGACTCAGGCCGACCCAAACCAGTGGAATGGTAGTGGATATTATGGATATGCACAGGGCTATGAAAATTATGGTTATGCTCCCGCTGGGCAGGACCCCAACATGTATGGAAGCTATCCAGGGTATGCAAATTACCAACCTCCTCAGCAGCAGCAGCAACAAATGGGATATAGTTAA 1203 0.4879 MMQPGPGMAPPPSMAQQPNQQYQQQQPYMMMPPQAQPPQMWAPSAQAPTQSVPPSQPVQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEMASVKVIRNKQTSQSEGYGFIEFTSRAAAERILQTFNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYHLQETFRGRYSSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKNPTTQSNKASYQNPQGAQNENDPNNTTIFVGNLDANVTDDHLRQVFGHYGELVHVKIPSGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQADPNQWNGSGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQQMGYS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02642 400 CDD RRM2_SECp43_like 159 238 - -
Aip01g02642 400 SUPERFAMILY RNA-binding domain, RBD 252 362 IPR035979 GO:0003676
Aip01g02642 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 147 IPR000504 GO:0003723
Aip01g02642 400 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 18 396 - -
Aip01g02642 400 SUPERFAMILY RNA-binding domain, RBD 152 251 IPR035979 GO:0003676
Aip01g02642 400 SMART rrm1_1 267 334 IPR000504 GO:0003723
Aip01g02642 400 SMART rrm1_1 68 143 IPR000504 GO:0003723
Aip01g02642 400 SMART rrm1_1 161 235 IPR000504 GO:0003723
Aip01g02642 400 MobiDBLite consensus disorder prediction 234 267 - -
Aip01g02642 400 MobiDBLite consensus disorder prediction 1 60 - -
Aip01g02642 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Aip01g02642 400 Gene3D - 247 347 IPR012677 -
Aip01g02642 400 SUPERFAMILY RNA-binding domain, RBD 28 148 IPR035979 GO:0003676
Aip01g02642 400 MobiDBLite consensus disorder prediction 14 30 - -
Aip01g02642 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Aip01g02642 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 225 IPR000504 GO:0003723
Aip01g02642 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 134 IPR000504 GO:0003723
Aip01g02642 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
Aip01g02642 400 MobiDBLite consensus disorder prediction 230 267 - -
Aip01g02642 400 MobiDBLite consensus disorder prediction 385 400 - -
Aip01g02642 400 CDD RRM1_SECp43_like 68 148 - -
Aip01g02642 400 MobiDBLite consensus disorder prediction 379 400 - -
Aip01g02642 400 CDD RRM3_NGR1_NAM8_like 265 336 - -
Aip01g02642 400 Gene3D - 152 246 IPR012677 -
Aip01g02642 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 396 - -
Aip01g02642 400 MobiDBLite consensus disorder prediction 40 60 - -
Aip01g02642 400 Gene3D - 10 151 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02642 Aip-Chr1 127040157 127044114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02642 68 345 Eukaryotic Initiation Factors Gene Family AT4G34110 27.817 3.96e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02642 - - gmx:100814743 644.039