Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02613 ATGGCTGATTTGTTGGAATGGCCGAAGCAAGATAAGCGCCGCTTACTTCATGTGGTTTACCGTGTTGGTGATCTTGATCGCACCATCAAGTTTTATACTGAATGCTTTGGAATGAAGCTTTTGAGGCAAAGGGATGTTCCAGAGGAGAAATACGCCAATGCTTTTCTCGGATTTGGCCCTGAAGAATCTCATTTTGTTGTGGAGTTAACATATAATTATGGAGTGAGTTCATATGACATTGGAGATGGCTTTGGACATTTTGCTATTGCAACACAAGATGTATACAAATTGGCTGAACACATCCGGTCCAAGGGTGGAAACATCACAAGGGAGCCTGGTCCGGTTCAGGGAGGAACCACGGTCATCGCCTTTGTTAAAGATCCTGACGGTTACACTTTTGGTCTCATCCAAAGACCTACCATCCATGACCCTTTTTGCCAAATAATGCTTCGTGTTGGTGACTTAGAGCGCTCAATTCAGTTTTATGAAAAGGCTGTGGGTCTTAAGTTGTTGAGGAAGGTTGACAAGCCTGAGTACAAGTACACTGCAGCACTTCTTGGGTATGCAGAGGAGCACGAAACAACTGTGTTGGAGTTGACATACAACTATGGTGTCACTGAACACTCTAAGGGAAATGCTTATGCACAGATTGCTATTGGTACCGATGATGTATACAAGAGCGCGGAAGTTGTTAGCGCCATTGCACAAGAGCTTGGAGGCAAGATTACTCGGCCACCGGGTCCAATTCCCGGCATTAACACGAAAATTACTTCTTTCTTGGATCCTGATGGATGGAAAACTGTCTTGGTTGACAATGAAGATTTCCTGAAGGAACTGAACTGA 843 0.4437 MADLLEWPKQDKRRLLHVVYRVGDLDRTIKFYTECFGMKLLRQRDVPEEKYANAFLGFGPEESHFVVELTYNYGVSSYDIGDGFGHFAIATQDVYKLAEHIRSKGGNITREPGPVQGGTTVIAFVKDPDGYTFGLIQRPTIHDPFCQIMLRVGDLERSIQFYEKAVGLKLLRKVDKPEYKYTAALLGYAEEHETTVLELTYNYGVTEHSKGNAYAQIAIGTDDVYKSAEVVSAIAQELGGKITRPPGPIPGINTKITSFLDPDGWKTVLVDNEDFLKELN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02613 280 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 144 272 IPR037523 -
Aip01g02613 280 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 13 144 IPR029068 -
Aip01g02613 280 TIGRFAM glyox_I: lactoylglutathione lyase 146 275 IPR004361 GO:0004462|GO:0046872
Aip01g02613 280 TIGRFAM glyox_I: lactoylglutathione lyase 3 146 IPR004361 GO:0004462|GO:0046872
Aip01g02613 280 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 133 IPR004360 -
Aip01g02613 280 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 148 266 IPR004360 -
Aip01g02613 280 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 4 280 - -
Aip01g02613 280 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 14 138 IPR037523 -
Aip01g02613 280 ProSitePatterns Glyoxalase I signature 1. 17 38 IPR018146 GO:0004462|GO:0046872
Aip01g02613 280 Gene3D - 141 280 IPR029068 -
Aip01g02613 280 PANTHER LACTOYLGLUTATHIONE LYASE 4 280 - -
Aip01g02613 280 CDD GlxI_Ni 15 136 - -
Aip01g02613 280 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 145 271 IPR029068 -
Aip01g02613 280 Gene3D - 1 138 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02613 Aip-Chr1 126488369 126490419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02613 147 271 Calmodulin-binding Proteins AT1G08110 27.333 3.59e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02613 K01759 - gmx:100793089 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02613 01 126488369 126490419 Aip04g00501 04 5922892 5925376 PCT