Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02597 ATGGACACAGCAGGATGGGCTCTCACTCTTGATTCCTCTTCTTCATTTTCCTCTTCTAAGAGTTCTGCCATCCGCCACAGCAACAAAAGCCACGTCAGCATCATGTTCCCAACCTTGGGAGGGTTTTCTGCCACCGATCCATCCATGTCGTCAGATCATAACAATCGAGCGGTTGTGGGCGAAGTGGACTTCTTCAACACGTCATCATCCTCATCCGTTAAGAACCAGACTTGCACTCATGGAAGCCTTTCCGAGTTTAATCTCCACGTAAATACTGGTCTGCAACTCCTTACTGCCAACAGTAAAAGCGATCAATCTACGGTGGATGATGGGGTTTCATCAGACGCTGAAGATAAGCGCCCAAAAACCACCCAGCTGGTACAAGTGCAAGAAGAACTCCAACGTGTGAATTCAGAGAACCAAAAGCTAAAGGAGACGCTCAACCATATGAGAAGTAGCTACATGAATTTGCAAATGCAAGTTGCCGCATTAATGCAACACCAACAGAAACAGCAAGTTTCCGAGACCACCACAGAAAATCATGAGAAAAAGGAAGGGGGTAGTAGTGGAGGTGGAGGAATGATACCAAGACAGTTGCTTGATTTAGTTGCAAGTGGCACAGCCGAAGTAGACGATCAAGTATCTAATTCTTCTTCAGAAGAAAGAACTCGATCCAGCACACCTCAAAACCATAAAAACAGCAATGGCAAAATGGAGAATACTGGAGAGGATTTAGAATCATCACAACAAGGTTGGGAAAATCCCAACAAGTTTCAGAGACTGAACCCTGCCACAGATCAATCCACTGCAGAAGCCACCATGCGAAAAGCTCGTGTCTCTGTCCGCGCCCGATCAGAAGCCCCTATGATCAGCGACGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATATTACAGATGCACCATGGCAGTTGGTTGCCCAGTTCGTAAACAAGTTCAACGTTGTGCGGAGGATAGAACAATATTGATAACGACATACGAAGGGACGCACAACCACCCACTGCCGCCTGCTGCGATGGCGATGGCGTCCACAACGGCGGCGGCGGCTAGCATGCTTCTCTCTGGATCAATGTCAAGCGCTGACGGAATAATGAACTCGAGCATGATGGCAAGAGCGATTCTTCCGTCTTCAAGCATGGCAACGCTATCAGCATCAGCACCATTCCCAACCGTCACACTCGACCTCACGCACCAACCGAACGCGTTGCCTTTGCAGTATCACCAACGGCAGCAACAACAACAACAACAACATCCTCACGCGCAATTGCCGCAAGTGATTGCACAAGCGCTCTATAACCAATCCAAATTCTCTGGCCTTCAATTGTCTCAAGATGTTGGTTCCTCCCAAGCTTCAAGGCTACCGTCGTTGCACCCTAACCAAAATAATCCCTTGCTCGCCGACAAGGTCAACGCCATCACCAACGATCCTAACTTCACGGCGGTCGTCGCAGCCGCCATTTCCTCCATCATCGGTGGGGCTCATCAAAATAACAACGCCAACAACTCCGACGCAAATCCCAATATCATCAACAGTGCTACAGTCGGCAGCTTTTCAGGAAATTAG 1611 0.4867 MDTAGWALTLDSSSSFSSSKSSAIRHSNKSHVSIMFPTLGGFSATDPSMSSDHNNRAVVGEVDFFNTSSSSSVKNQTCTHGSLSEFNLHVNTGLQLLTANSKSDQSTVDDGVSSDAEDKRPKTTQLVQVQEELQRVNSENQKLKETLNHMRSSYMNLQMQVAALMQHQQKQQVSETTTENHEKKEGGSSGGGGMIPRQLLDLVASGTAEVDDQVSNSSSEERTRSSTPQNHKNSNGKMENTGEDLESSQQGWENPNKFQRLNPATDQSTAEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMSSADGIMNSSMMARAILPSSSMATLSASAPFPTVTLDLTHQPNALPLQYHQRQQQQQQQHPHAQLPQVIAQALYNQSKFSGLQLSQDVGSSQASRLPSLHPNQNNPLLADKVNAITNDPNFTAVVAAAISSIIGGAHQNNNANNSDANPNIINSATVGSFSGN 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02597 536 Coils Coil 126 160 - -
Aip01g02597 536 ProSiteProfiles WRKY domain profile. 285 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip01g02597 536 MobiDBLite consensus disorder prediction 101 124 - -
Aip01g02597 536 Pfam WRKY DNA -binding domain 292 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip01g02597 536 Gene3D WRKY domain 275 352 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip01g02597 536 PANTHER WRKY TRANSCRIPTION FACTOR 6 33 518 - -
Aip01g02597 536 SMART WRKY_cls 290 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip01g02597 536 MobiDBLite consensus disorder prediction 209 274 - -
Aip01g02597 536 MobiDBLite consensus disorder prediction 208 277 - -
Aip01g02597 536 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 33 518 IPR044810 GO:0003700
Aip01g02597 536 SUPERFAMILY WRKY DNA-binding domain 283 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip01g02597 536 MobiDBLite consensus disorder prediction 165 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02597 Aip-Chr1 126340967 126343087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02597 54 517 WRKY Transcription Factor Family AT1G62300 54.108 1.57e-140 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip01g02597 WRKY 5.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02597 - - ccaj:109803638 536.954