Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02556 ATGGCCACCTTAACCTTCCTCTTAGTTTCTTCAATCCTCTTAACCTTTGTTAATGCATATTCAACATACAACACAACCCAAATTTTCTCAAACCATATCCACAACCCTCCCAAGAATAAACCATTCCTCAACACCATAGACTCTTGCCGGCGAGCCCAAACAAACTGGGCCTCCAATCCGCACGCCTTGGCCGATTGCGCTATTGGTTTCGGCCAAGGCGCCATTGGAGGCAAACATGGAAACTTATACATTGTAACCGATCCTTCAGATGATGCTGTGAATCCAGCAAAAGGCACGCTTCGTTATGGTGCAATTCAAATGGAGCCACTATGGATAATGTTTGAGAAAGACATGGTTATTAGGCTTGAGAATGAGCTCATAGTGAATAGCTACAAGACCATTGATGGAAGAGGAGCCAAAGTTGAGATATCAAACGGGCCATGCATTACAATACAAGGTGTTAGCAACGTCATTATTCATGGCATTAGCATCCATGATTGTCAACCGGGTACGGTTGGCCTCGTCAGAAGTAGCCCTGACCATGTCGGCCACCGTCGAGGCTCCGACGGCGACGCCATCAGCATATTTTCATCATCCAATATTTGGGTTGATCATTGCTTCTTCGCACGTTCTGCTGATGGCCTAATTGATATTATTCATGCTTCAACTTCCATTACCATTTCTAACAATTATTTCACCCAGCATGACAAAGTTATGCTACTAGGACACAATGATGAATACACGGCAGATAAAATAATGAAGGTAACAATAGCCTTCAACCGGTTTGCTAGTGGCCTAACTGAAAGAATGCCAAGGGTAAGATTTGGTTACGCCCATGTGGTCAACAACCAATATGATGAGTGGAAAATGTATGCTATAGGAGGGAGTTCTAATCCAACCATTTTAAGCGAAGGGAACGTTTATATAGCACCAAATAACGATAACGCGAAACAGATTACAAAGAGAGAAGCGAAGCAAAACTGGAAGAACTGGAAATGGAGGTCTTCCAAGGATTTATTCGTGAATGGTGCATATTTTGTACCATCTGGATATGGGAATTGTGCCCCAAATTATTCAAATACTCAATCTTTTAATGTTGTTCGAGCGTACATGGTGCCAACAATAACTCTCAATGCAGGTCCCTTAAGTTGTATTGTTGGCAGAGCATGTTAA 1173 0.4263 MATLTFLLVSSILLTFVNAYSTYNTTQIFSNHIHNPPKNKPFLNTIDSCRRAQTNWASNPHALADCAIGFGQGAIGGKHGNLYIVTDPSDDAVNPAKGTLRYGAIQMEPLWIMFEKDMVIRLENELIVNSYKTIDGRGAKVEISNGPCITIQGVSNVIIHGISIHDCQPGTVGLVRSSPDHVGHRRGSDGDAISIFSSSNIWVDHCFFARSADGLIDIIHASTSITISNNYFTQHDKVMLLGHNDEYTADKIMKVTIAFNRFASGLTERMPRVRFGYAHVVNNQYDEWKMYAIGGSSNPTILSEGNVYIAPNNDNAKQITKREAKQNWKNWKWRSSKDLFVNGAYFVPSGYGNCAPNYSNTQSFNVVRAYMVPTITLNAGPLSCIVGRAC 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02556 390 PANTHER PECTATE LYASE 10 389 - -
Aip01g02556 390 SUPERFAMILY Pectin lyase-like 64 389 IPR011050 -
Aip01g02556 390 Gene3D - 43 383 IPR012334 -
Aip01g02556 390 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Aip01g02556 390 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Aip01g02556 390 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Aip01g02556 390 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Aip01g02556 390 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Aip01g02556 390 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Aip01g02556 390 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Aip01g02556 390 PRINTS Pollen allergen Amb family signature 361 384 IPR018082 -
Aip01g02556 390 Pfam Pectate lyase 126 308 IPR002022 -
Aip01g02556 390 PANTHER PECTATE LYASE 18-RELATED 10 389 IPR045032 GO:0030570
Aip01g02556 390 SMART amb_all 117 314 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02556 Aip-Chr1 125973604 125975558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02556 4 384 Polysaccharide Lyase AT4G22080 62.211 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02556 K01728 - gmx:100807483 620.928