Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02546 ATGGAGGAGGAGGGTAATGGCACTTATAGTATGATGGCTTTTGGCGAGAACATCATGAGTACTAGTAATAATAGTGGGATTTATCCAATCATCATGATGCCTTTACTCACTACCCCAGTTATTAATCCTCTTCCTAATCTTAATTACTCTAATCCTAATAATACTAGTAATGATAATGCAGACACAAATAGTTCCTTCCCTCTTCCCATGCTTACTACTCATCAAGAACCAATCCGCAACAACACTGGGATATGTTACTTCATGGACATACACAACAACCACCATGGAAGCTCTTCTTCTTCCTCTTCAGCTCTCAAGGCCAAGATCATGTCTCATCCTCACTATCATCGCCTCTTGGCTGCATACGTCAATTGTCAAAAGGTTGGAGCACCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGAATCTGCAGCGGCAATGGCAGCAACTTCTTGCATAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTTATCAAGTACGAGCAAGAACTCTCCAAACCCTTCAAGGAATCCATGCTTTTCCTTCAGCGCATGGAGTCCCAGTTCAAATCCCTCTCCATTTCTCCTTCCAATAACTTCGCCGGTAATGAAGGTGTTGATAGGAATGGATCATCCGAGGATGATGTTGATTTACAAAACAATGCAATAATTGATCCGCAAGCAGAGGACCGGGAGCTGAAGGGTCAGCTATTGCGCAAGTACAGCGGATACCTTGGTAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGGAAGCTCCCTAAAGAAGCAAGGCAACAGCTACTTGAATGGTGGAGCAGACATCACAAATGGCCTTACCCATCTGAATCACAGAAGGTGGCGCTTGCAGAGTCAACAGGTTTGGACCAGAAACAGATAAACAACTGGTTTATTAATCAAAGGAAACGGCATTGGAAGCCTTCAGAGGATATGCAGTTTGTGGTGATGGATCAAAGCCATCCACATTATTACATTGACAATGTTGTGGCCAATCCCTTTCCCATGGATTTTTCTCACACAATGCTTTGA 1074 0.4395 MEEEGNGTYSMMAFGENIMSTSNNSGIYPIIMMPLLTTPVINPLPNLNYSNPNNTSNDNADTNSSFPLPMLTTHQEPIRNNTGICYFMDIHNNHHGSSSSSSSALKAKIMSHPHYHRLLAAYVNCQKVGAPPEVVARLEEACESAAAMAATSCIGEDPALDQFMEAYCEMLIKYEQELSKPFKESMLFLQRMESQFKSLSISPSNNFAGNEGVDRNGSSEDDVDLQNNAIIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHHKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDQSHPHYYIDNVVANPFPMDFSHTML 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02546 357 Pfam Homeobox KN domain 279 318 IPR008422 GO:0003677|GO:0006355
Aip01g02546 357 ProSiteProfiles 'Homeobox' domain profile. 259 322 IPR001356 GO:0003677
Aip01g02546 357 SMART ELK_2 239 260 IPR005539 GO:0003677
Aip01g02546 357 PANTHER - 6 346 - -
Aip01g02546 357 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Aip01g02546 357 CDD homeodomain 271 323 IPR001356 GO:0003677
Aip01g02546 357 SMART HOX_1 261 326 IPR001356 GO:0003677
Aip01g02546 357 Pfam ELK domain 239 260 IPR005539 GO:0003677
Aip01g02546 357 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 346 - -
Aip01g02546 357 SUPERFAMILY Homeodomain-like 261 336 IPR009057 -
Aip01g02546 357 Pfam KNOX2 domain 153 199 IPR005541 GO:0003677|GO:0005634
Aip01g02546 357 Gene3D - 264 326 - -
Aip01g02546 357 Pfam KNOX1 domain 104 143 IPR005540 GO:0003677|GO:0005634
Aip01g02546 357 ProSiteProfiles ELK domain profile. 239 259 IPR005539 GO:0003677
Aip01g02546 357 SMART KNOX2_2 150 201 IPR005541 GO:0003677|GO:0005634
Aip01g02546 357 ProSitePatterns 'Homeobox' domain signature. 297 320 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02546 Aip-Chr1 125867150 125871218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02546 105 357 Homeobox Transcription Factor Family AT1G62360 80.228 3.99e-134 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aip01g02546 KNOX2 2.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02546 - - gmx:547796 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02546 01 125867150 125871218 Aip04g00540 04 6463600 6468303 PCT