Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02541 ATGGCAGTTCAAGTTCACCAATATTCCCCCTCAAAAGCCAACAAAAGAATCATGCAGTTCTTCCATAAAGACGGTTATAATTGGCGGAAGAAAAGCGATCGAAGAATTGTGGGAGAAGCACATGAACGGCTTAAGATTGGAAACGTTGAAATACTAAATTGTTACTATGCACATAGAGAGGAGAATCGTAGTTTCCAGAAGAGGAGCTACTGGATACTGGATCCCTGTAAACTGGGAGAACTCAATTTTCCAAGGCTGAGATTGAATCACAAGAGTTTCTTTCCAGCTATGACTAAGATTGTCGGCACACCCGATCCAAAGTCTCGTTCAATCGACACAATTTCACGTTGCCTTGACGCAGGAATTTCTGTTTCAAGGTTTGATTTGTCGTGCGAAAATCCGAATACCACCAAGAGACATTGGAAAACTTGA 432 0.4167 MAVQVHQYSPSKANKRIMQFFHKDGYNWRKKSDRRIVGEAHERLKIGNVEILNCYYAHREENRSFQKRSYWILDPCKLGELNFPRLRLNHKSFFPAMTKIVGTPDPKSRSIDTISRCLDAGISVSRFDLSCENPNTTKRHWKT 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02541 143 PANTHER CALMODULIN-BINDING PROTEIN 13 75 - -
Aip01g02541 143 SMART CG_1_2 4 104 IPR005559 GO:0003677
Aip01g02541 143 Pfam CG-1 domain 14 75 IPR005559 GO:0003677
Aip01g02541 143 ProSiteProfiles CG-1 DNA-binding domain profile. 1 96 IPR005559 GO:0003677
Aip01g02541 143 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02541 Aip-Chr1 125728527 125731656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02541 14 75 CAMTA Transcription Factor Family AT1G67310 61.290 1.43e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02541 K21596 - gmx:100791430 114.005