Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02538 ATGAGTCAACTGGGTATGATGCTGCAGGAATCGTTGCGAGCTGAAACGGAGGCAAGAACCATTCTGGGTCTCTTAACGGACCAGATGGACGGCGTTGTCCACACAGGACAACGCAGAAGGAGAACTCTCAAGGACCGCTTCAGATTCACCGGAATGGGTTGCTGCGGTGCCACCTGGGTTTTCCGTCCCTCTCCCCTAACCCTCACTACGCACGCTGCACACCAACAAGAGGCGCCTGAGGGTGGAGCTGCAGTAGCCGCATCACCGCCGCAAGAAACGGACCCGGGTCAAGATCCGAACCGGGACGGGCCCGAATGCGAACGGCCCTCTACGGGGATGAATCTGGCGGCGGCATTGGCGGCGGAGCGTGAATTGCGGGGTTCGCAGGAGGAGGGGGAGAGGGATGTCGCGGGATCGGAGACGCCATGGAGGATGTCGCTGATGCGGCTGCTGGAGGAAACGGAAGGAGGAGGGGAAAGGGGTGGTGGTGGGGATAGTGAAGAAGGGGGTGATTGGGTGTGCTGCGTGTGCATGGGGCGGAAGAAAGGCGCGGCGTTCATACCATGTGGACACACGTTCTGCAGAGTGTGCTGTCGAGAGGTCTGGTTGAACCGGGGCACCTGCCCTCTTTGCAACCGTTCCATTCTAGAGATTCTCGATATCTTCTAA 669 0.5949 MSQLGMMLQESLRAETEARTILGLLTDQMDGVVHTGQRRRRTLKDRFRFTGMGCCGATWVFRPSPLTLTTHAAHQQEAPEGGAAVAASPPQETDPGQDPNRDGPECERPSTGMNLAAALAAERELRGSQEEGERDVAGSETPWRMSLMRLLEETEGGGERGGGGDSEEGGDWVCCVCMGRKKGAAFIPCGHTFCRVCCREVWLNRGTCPLCNRSILEILDIF 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02538 222 CDD RING-HC 174 211 - -
Aip01g02538 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 221 IPR013083 -
Aip01g02538 222 ProSiteProfiles Zinc finger RING-type profile. 174 212 IPR001841 -
Aip01g02538 222 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 222 - -
Aip01g02538 222 SMART ring_2 174 211 IPR001841 -
Aip01g02538 222 SUPERFAMILY RING/U-box 169 219 - -
Aip01g02538 222 MobiDBLite consensus disorder prediction 72 110 - -
Aip01g02538 222 PANTHER OS01G0917900 PROTEIN 17 222 - -
Aip01g02538 222 MobiDBLite consensus disorder prediction 124 138 - -
Aip01g02538 222 Pfam Zinc finger, C3HC4 type (RING finger) 173 216 - -
Aip01g02538 222 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02538 Aip-Chr1 125712950 125713702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02538 21 222 C3H Transcription Factor Family AT4G22250 50.237 1.07e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02538 - - gmx:106799504 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02538 01 125712950 125713702 Aip04g00549 04 6613690 6618230 PCT