Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02536 ATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGTGGTGGTTCAAACGCAAACTCAAACCCAAATTCAAACCAAGCCTCTGTTGATAGTTCAGCGGCACCACCACCACCACCAGTGGCTAATGGAGGAGTGGAGTTGGATTCTTCAATTTTTTTGAAGAGAGCGCATGAGCTGAAAGAGGAAGGGAATAAGCGATTTCAGAACAAGGATTATGCTGGCGCCCTTGAGCAGTATGATAATGCTCTTAGACTCACCCCAAAATCCCACCCAGACAGAGCCGTTTTCCATAGCAATAGAGCAGCTTGTTTAATGCAGATGAAGCCCATAGATTATGAAACTGTTATTGCTGAGTGCACCATGGCCCTTCAGGTCCAGCCTCGATTTGTCCGGGCACTCCTTCGAAGGGCCCGGGCTTTTGAGGCTGTAGGCAAGTATGAAATGGCTGTGCTAGATGTACAGACCTTGCTGGGAGCTGACCCTAATCACAGGGATGCTTTGGAGATTGCTCAGAGGTTGAAGACTGCATTGGGGCCTCGACAGGAGGCCCAGCAGGACCTCCACAGTCGCCCCTCCCCTGCTGCCCTTGGTGCTTCTGCTGTCCGTGGTGCCCCTATTGCTGGTCTAGGGCCATGTTTGCCAGCCCGGCCAGTTCAAAAGAAGGCTGCAAATTCAGGAGGTGCATCAGTTGTGTCGCCTAACAACAAGCTAGACCGGCCACAAGCTGTTTCACCATCTGAAAATGGTCCTGATGGCAAGTCCCAGTTTCCAAAAGTTGTGTTGAAGTCTTCAAATGGTCCCGCAAAGCTTCCTAATATGAAAAATGAAAACCAAAAGGAACACTCGTCTCATTTGTCCACTATTAATGGACAGTGTTCGGAGGTCAGAGTTCGGTGGAGACCATTGAAGCTTGTTTATGACCATGACATTAGACTTTCCCAGATGCCAGTGAATTGCAGTTTTAGGGTTCTAAGAGATATAGTGAGCAAAAGGTTTCCTTCATCAAGTTCAGTTCTGATCAAGTACAAGGATAATGATGGTGATCTGGTTACTATAACCTCTACTGATGAACTTAGATTGGCAGAGTCTAGTGCTGATAGCCATCTTCTGAAAGAACCTGAAGCAGATAAAAGTGATTCCGTAGGGATGCTGAGACTACATATTGTTGAAGTTAGTCCTGAGCAAGAGCCTCTTCTGCTGGAAGAAGAGGAAGAGAAACCTGTTGAGAATGAGGAGATCAAGGTAGATGAGAATGGGTCTCATTCATCTCCGAGTGAATCTGCCCATGAAGTTCCTGATACTGAGGTTGATAAGATAGGGAAGGAGGCTCCAAAAGAAAAATCCGGAACCACAGAAGATGCTGAAAGCAAAGAAGTGGAGATGGATGACTGGTTGTTTGAGTTTGCTCAACTTTTCCGCTCACATGTTGGTATTGATCCAGATGCTCATATTGATTTGCATGAGCTTGGAATGGAACTCTGTTCAGAGGCACTTGAGGAAACAGTAACCAGTGAAGAGGCTCAGGAACTCTTTGACAAGGCTGCTTCAAAGTTCCAGGAGGTGGCCGCATTGGCATTCTTCAACTGGGGAAATGTTCACATGTGTGCAGCTAGAAAGCGGATCCCATTAGATGAGTCTGCCGGGAAGGACGTGGTAGCAGAACAGCTTCAAGTGGCTTATGACTGGGTCAAGGAAAAGTATTCTTTGGCAAGAGATAAGTACAATGAAGCACTCTTGATTAAACCAGACTTCTATGAGGGACTTTTGGCTCTTGGGCAGCAACAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCTCTGGCTAAGAAAATAGATTTATCAAGCTGGGATCCAACAGAGACGCTTGAACTTTTCGACAGTGCAGAGACCAAGATGAAAGCTGCAACTGATATGTGGGAGAAGCTGGAGGAACAGAAAGCAAATGAGCAAAAGGACCCCAATTCGACAAAGAAAGATGATTTGTTGAGAAGAAGAAAGAAACAAGGTGGAGGGGCTGCTGAAGCCGAGTCCTCCGGCGTTGGTGGTCCAGGTGATATATCTCCAGAAGAAGCTGCTGAGCAAACAGCCGTCATGAGATCCCAGATTCACCTCTTCTGGGGTAATATGCTTTTCGAAAGATCCCAAGTTGAATGCAAATTAGAGATGAGTGGTTGGAAGGAAAAACTGGAAGCTGCCACTGAACGCTTTAAGCTTGCTGGAGCTTCTGAAGCGGACATTTCAATGGTTCTAAAGAATCACTGCTCAAATGGAGATGCAAAAGAAGGAGATGATAAAAAGATTGACAATCCGCAACCCAGTAAGACTGCTGAAGTAGAGAACAATAAGTGA 2343 0.4614 MGKSGGRRKKGGGSNANSNPNSNQASVDSSAAPPPPPVANGGVELDSSIFLKRAHELKEEGNKRFQNKDYAGALEQYDNALRLTPKSHPDRAVFHSNRAACLMQMKPIDYETVIAECTMALQVQPRFVRALLRRARAFEAVGKYEMAVLDVQTLLGADPNHRDALEIAQRLKTALGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPVQKKAANSGGASVVSPNNKLDRPQAVSPSENGPDGKSQFPKVVLKSSNGPAKLPNMKNENQKEHSSHLSTINGQCSEVRVRWRPLKLVYDHDIRLSQMPVNCSFRVLRDIVSKRFPSSSSVLIKYKDNDGDLVTITSTDELRLAESSADSHLLKEPEADKSDSVGMLRLHIVEVSPEQEPLLLEEEEEKPVENEEIKVDENGSHSSPSESAHEVPDTEVDKIGKEAPKEKSGTTEDAESKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQELFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKDVVAEQLQVAYDWVKEKYSLARDKYNEALLIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSSWDPTETLELFDSAETKMKAATDMWEKLEEQKANEQKDPNSTKKDDLLRRRKKQGGGAAEAESSGVGGPGDISPEEAAEQTAVMRSQIHLFWGNMLFERSQVECKLEMSGWKEKLEAATERFKLAGASEADISMVLKNHCSNGDAKEGDDKKIDNPQPSKTAEVENNK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02536 780 ProSiteProfiles PB1 domain profile. 297 389 IPR000270 GO:0005515
Aip01g02536 780 MobiDBLite consensus disorder prediction 11 29 - -
Aip01g02536 780 ProSiteProfiles TPR repeat profile. 54 87 IPR019734 GO:0005515
Aip01g02536 780 MobiDBLite consensus disorder prediction 642 669 - -
Aip01g02536 780 MobiDBLite consensus disorder prediction 1 43 - -
Aip01g02536 780 MobiDBLite consensus disorder prediction 394 408 - -
Aip01g02536 780 Pfam PB1 domain 297 388 IPR000270 GO:0005515
Aip01g02536 780 MobiDBLite consensus disorder prediction 223 249 - -
Aip01g02536 780 MobiDBLite consensus disorder prediction 754 770 - -
Aip01g02536 780 Gene3D Tetratricopeptide repeat domain 50 175 IPR011990 GO:0005515
Aip01g02536 780 SUPERFAMILY CAD & PB1 domains 294 367 - -
Aip01g02536 780 CDD PB1 300 369 - -
Aip01g02536 780 SMART tpr_5 92 127 IPR019734 GO:0005515
Aip01g02536 780 SMART tpr_5 128 161 IPR019734 GO:0005515
Aip01g02536 780 SMART tpr_5 54 87 IPR019734 GO:0005515
Aip01g02536 780 Coils Coil 623 650 - -
Aip01g02536 780 MobiDBLite consensus disorder prediction 642 692 - -
Aip01g02536 780 MobiDBLite consensus disorder prediction 393 456 - -
Aip01g02536 780 MobiDBLite consensus disorder prediction 216 285 - -
Aip01g02536 780 MobiDBLite consensus disorder prediction 751 780 - -
Aip01g02536 780 SMART PB1_new 297 389 IPR000270 GO:0005515
Aip01g02536 780 PANTHER - 1 778 - -
Aip01g02536 780 MobiDBLite consensus disorder prediction 426 453 - -
Aip01g02536 780 SUPERFAMILY TPR-like 51 185 IPR011990 GO:0005515
Aip01g02536 780 Gene3D - 299 369 - -
Aip01g02536 780 PANTHER PROTEIN CLMP1 1 778 IPR044517 -
Aip01g02536 780 SUPERFAMILY TPR-like 473 599 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02536 Aip-Chr1 125663852 125666792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02536 22 175 Calmodulin-binding Proteins AT3G25230 26.257 1.20e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02536 - - gmx:100786963 1165.98