Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02501 ATGGGAATTGATGAGGCACAAGAGTCATTGCTTGCAAGAGATCATTATCATGAGAAAAGTGACCTCCAGAGAAGAAGGTCCACCAGGAATTATGGCACAGCTTCATCTGATTCATCGTCACAGACAATCAACAATCTCCAACAAAATAATAGTAATCATGTAGTTATAGTCCAAAATAATAATAATAATAATAATAATAATCCTTCAACAGCACAAGCAGAATTTCAATTGAAACCAGTGTTGTTGTGGCTAACAATGTACCTAGGTGGAGGTACCCTATGCTTCTATATGATAAGTAACCAAATTGAAGGTACAAAAACCAATCCCTTTCTTGATGCACTTTACTTGTGTGTTGTGACAATGACCACCGTGGGTTATGGAGATCTTGTCCCTAAAAGCACAGTGGCAAAACTACTTGCATGCTTCTATGTCTTCACCGGAATGGCCCTCGTTGGTTTGATTCTTAACAAAGCAGCAGATTACATTGTTGAGAAGCAAGAAATGTTGTTTGTTAAGGCCATGCACAAAGAGATTGACAAAGAGTTTCAATCTAACAACAATAGCAACAAGGCCAAACACAAGTTCTTGGTTGCAATTTGCACCTTCTTGGTGCTTATTACAGTGGGAGTGATTTTCCTATCTTGTGTTGAGGATCTTGATTTTGTGGATGCATTGTATTGTGTTTGTTCCACAGTGACAACTTTGGGTTATGGGGATAAGAGTTTTTCAACTGGAATTGGTCGTGCTTTTGCAGTGTTTTGGATATTGAGTAGCACCATTTGCTTAGCTCAATGTTTTGCATATCTTGCTGAAATGCACACTGATGAAAGACAAAGATCACTTGCCAAAATGATTCTTTCTAGGAAAATCTCACGTCCTGATCTTGAAGCTGCTGATCTTGATGGAGACAAATCTGTTAGTGCTGCAGAGTTTGTTGTATACAAGTTGAAGGAAATGGGAAAGATCAACGATGAAGATGTTTCCGATGTATTGGAATGGTTTAGAAAACTAGATGTAGATAAATCAGGAACTCTGACAGAAGCTGATATCATTTGA 1056 0.3816 MGIDEAQESLLARDHYHEKSDLQRRRSTRNYGTASSDSSSQTINNLQQNNSNHVVIVQNNNNNNNNNPSTAQAEFQLKPVLLWLTMYLGGGTLCFYMISNQIEGTKTNPFLDALYLCVVTMTTVGYGDLVPKSTVAKLLACFYVFTGMALVGLILNKAADYIVEKQEMLFVKAMHKEIDKEFQSNNNSNKAKHKFLVAICTFLVLITVGVIFLSCVEDLDFVDALYCVCSTVTTLGYGDKSFSTGIGRAFAVFWILSSTICLAQCFAYLAEMHTDERQRSLAKMILSRKISRPDLEAADLDGDKSVSAAEFVVYKLKEMGKINDEDVSDVLEWFRKLDVDKSGTLTEADII 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02501 351 ProSiteProfiles EF-hand calcium-binding domain profile. 325 351 IPR002048 GO:0005509
Aip01g02501 351 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 39 349 IPR003280 GO:0005267|GO:0016020|GO:0071805
Aip01g02501 351 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 39 349 - -
Aip01g02501 351 Gene3D - 294 351 - -
Aip01g02501 351 PRINTS Two pore domain K+ channel signature 119 147 IPR003280 GO:0005267|GO:0016020|GO:0071805
Aip01g02501 351 PRINTS Two pore domain K+ channel signature 233 242 IPR003280 GO:0005267|GO:0016020|GO:0071805
Aip01g02501 351 Pfam Ion channel 83 163 IPR013099 -
Aip01g02501 351 Pfam Ion channel 202 272 IPR013099 -
Aip01g02501 351 Gene3D - 172 292 - -
Aip01g02501 351 ProSitePatterns EF-hand calcium-binding domain. 338 350 IPR018247 -
Aip01g02501 351 SUPERFAMILY Voltage-gated potassium channels 188 288 - -
Aip01g02501 351 Gene3D - 75 171 - -
Aip01g02501 351 MobiDBLite consensus disorder prediction 15 44 - -
Aip01g02501 351 SUPERFAMILY Voltage-gated potassium channels 78 169 - -
Aip01g02501 351 SUPERFAMILY EF-hand 295 350 IPR011992 -
Aip01g02501 351 MobiDBLite consensus disorder prediction 27 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02501 Aip-Chr1 125034546 125035674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02501 77 351 Ion Channels AT5G55630 55.674 1.91e-109 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02501 K05389 - gmx:100799492 414.846