Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02491 ATGGGGAATGTGAATGTCAATAATCATAATAATAACGGTGCTACTCATTCAGAAGAAGACGACGAAGACGATGAAGCTTCTTCTTCGGGTACTCTTCCCACACCTCCCACCGAATTGATAGGTCAATCTCCACCTACAAGCCCCAGAGCTACCCATTCTCCCTTCATCTTCGCTCCTCAAGCTCCGGTGGTTCCACTACAGAGACCAGATGAGATGCATATTCCAAGTCAATCCTGGTTGCAATCTACCTCAGGGTATGAAGACATGTACAGTGAACTCGGAATTCCAACAATGATTACCTGGAGTTATGGTGGGAAAGAAGTAGCTGTGGAAGGGTCTTGGGATAGTTGGAAAACAAGAATACCATTGCAGAGGTCAGGGAAAGACTTCACAATAATGAAGGTACTGCCTTCTGGTGTTTACCAATATAGATTTATTGTGGATGGACGGTGGAGGTACACTCCGGACTCGCCATGGACACAAGATGATGCAGGGAATGCTTACAATATCTTAGACTTGCAGGATTATGTTCCTGAGGACATTGAAAGCATCTCTAGTTTTGAACCTCCTCAATCACCAGACTCAAGTTATAGCAGTTTACATCTTAGTTCTGATGATTATGCAAAGGAACCACCATTGGTTCCCCCACACTTGCAAATGACATTGCTAAATGTTCCAGTGACAAATATGGAAACGCAACCTCCTATGTCAAGACCTCAACATGGAGTGCTCAATCATCTTTACATGCAGAAAAGAAAGAGCACTCCTTCAGTGGTTGCGCTTGGCACAACGCATCGGTTTCTTGCCAAGTACGTCACTGTGGTGCTGTACAAGTCTCTGCAGAGGGTTCATATGGAGCACGCACCTGATAATGGAGGCAGCAATGGCGGTTTCGACAGTGGCACAAGAGAAGTGCGACCACTAGATCTTGAAGTGGATGATAAAATGGAAGAAAGAGTATTCTTTGATGAGATGATAGAAGAGTTAGATGATACAGAGGAATTTCAAGGAATGTATCAAGATGAAATTGAGCAGGAAGCTGTGAATTCTGAGGATTTAGGGGAGCAAGAATTTCAAGCAATGTTTGATGGGAACGATTTTTCACATGAGGTGGATGAATTATATCGAATAGAAGATATTGAAAATATTGCCATGGTTGATTTTCTGAACATGGGTGCTCATGAGATGGAATGTTTTCATTTTCCTAATATTCAGATAGCATTTGATTTCTATAACCATTATGCGAAATCTGTTGGTTTTGGTGCTAGAAAAAGTAAGACTTGGAAAAATAGCAAAGGAGAATATGTGAAGCAATTGTTTGTGTGCTCTCGTGAATCCACAAAATTGTAG 1350 0.42 MGNVNVNNHNNNGATHSEEDDEDDEASSSGTLPTPPTELIGQSPPTSPRATHSPFIFAPQAPVVPLQRPDEMHIPSQSWLQSTSGYEDMYSELGIPTMITWSYGGKEVAVEGSWDSWKTRIPLQRSGKDFTIMKVLPSGVYQYRFIVDGRWRYTPDSPWTQDDAGNAYNILDLQDYVPEDIESISSFEPPQSPDSSYSSLHLSSDDYAKEPPLVPPHLQMTLLNVPVTNMETQPPMSRPQHGVLNHLYMQKRKSTPSVVALGTTHRFLAKYVTVVLYKSLQRVHMEHAPDNGGSNGGFDSGTREVRPLDLEVDDKMEERVFFDEMIEELDDTEEFQGMYQDEIEQEAVNSEDLGEQEFQAMFDGNDFSHEVDELYRIEDIENIAMVDFLNMGAHEMECFHFPNIQIAFDFYNHYAKSVGFGARKSKTWKNSKGEYVKQLFVCSRESTKL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02491 449 SUPERFAMILY E set domains 95 180 IPR014756 -
Aip01g02491 449 MobiDBLite consensus disorder prediction 28 50 - -
Aip01g02491 449 Gene3D - 183 280 - -
Aip01g02491 449 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 282 IPR043554 -
Aip01g02491 449 CDD E_set_AMPKbeta_like_N 96 172 - -
Aip01g02491 449 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 208 278 IPR006828 GO:0005515
Aip01g02491 449 Gene3D Immunoglobulins 90 177 IPR013783 -
Aip01g02491 449 MobiDBLite consensus disorder prediction 1 54 - -
Aip01g02491 449 Pfam Glycogen recognition site of AMP-activated protein kinase 95 174 IPR032640 -
Aip01g02491 449 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 282 - -
Aip01g02491 449 SUPERFAMILY AMPKBI-like 177 279 IPR037256 -
Aip01g02491 449 SMART AMPKBI_2 190 280 IPR006828 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02491 Aip-Chr1 124830847 124835639 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip01g02491 AMPK1_CBM 3.1e-31 CL0369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02491 K07199 - gmx:100777497 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02491 01 124830847 124835639 Aip04g00641 04 7783227 7785475 PCT