Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02489 ATGATGGGTGAGTCAGATAACGAGTCAGGAGGTCAAGGAGGGAACGAGTTCTCATCATCATCAGGAGGTAGTGGACTATGCAGAGAACAGGACCGCCTTCTTCCGATTGCCAACGTCGGCAGAATCATGAAGAAGGCACTTCCGGCGAACGCCAAGATCTCAAAGGAGGCCAAAGAGACGGTGCAAGAGTGCGTTTCTGAGTTCATAAGCTTCATAACAGGGGAAGCTTCTGACAAGTGCCAGAAGGAGAAGAGGAAGACCATCAACGGTGATGATCTCTTGTGGGCCATGACTACGCTCGGATTCGAGGATTATGTGGAGCCTCTCAAGATTTATCTCCATAAGTACAGGGAGATGGAAGGTGACAAGACTCCCATCGTTGGTGGCGGCAGACAGCACCACTCTGATGATCACGCCGGTGATGACGCTGCCACCGCCGGAGCCCTTTATGGTGGTGTGCCTTCTACTATGATGATGATGATGGGGGGACACGTGTATGGATCTGCGAATAATGGATCAGCATCTTCTGGAAGAACTACTAGGTAG 546 0.511 MMGESDNESGGQGGNEFSSSSGGSGLCREQDRLLPIANVGRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGDKTPIVGGGRQHHSDDHAGDDAATAGALYGGVPSTMMMMMGGHVYGSANNGSASSGRTTR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02489 181 Gene3D Histone, subunit A 25 146 IPR009072 GO:0046982
Aip01g02489 181 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aip01g02489 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Aip01g02489 181 SUPERFAMILY Histone-fold 30 133 IPR009072 GO:0046982
Aip01g02489 181 MobiDBLite consensus disorder prediction 1 26 - -
Aip01g02489 181 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 2 165 - -
Aip01g02489 181 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Aip01g02489 181 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Aip01g02489 181 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Aip01g02489 181 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 165 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02489 Aip-Chr1 124807427 124808209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02489 2 166 CCAAT-HAP3 Transcription Factor Family AT4G14540 64.072 3.54e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aip01g02489 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02489 K08065 - gmx:100305641 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02489 01 124807427 124808209 Aip04g00643 04 7796857 7797396 PCT