Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02480 ATGGAAACTGGAGGAGGCTTTCACGGTTATCACAACCTTCCTACCACTACCTCTGGGTTGAAGCTATCTGTGTCAGAGATGAACATGAGAGCAGTAGAAAACAACAACACAGGAAGCAATAATAATACTCATACAGATGATAACGAATGCACTGTGAGGGAGCAAGATCGGTTCATGCCAATAGCAAATGTGATTAGGATAATGCGCAAGATCCTGCCACCGCACGCTAAAATCTCCGACGACGCAAAAGAAACAATACAAGAGTGCGTATCGGAGTACATCAGCTTTATCACCGGAGAAGCCAACGAGCGGTGTCAGAGGGAGCAACGGAAGACCATCACAGCGGAGGACGTTCTTTGGGCAATGAGTAAGCTTGGCTTTGACGATTACATTGAGCCTCTGACGATGTACCTTCATAGGTACCGTGAGCTTGAAGGTGACCGTACCTCCATGAGAGGAGAGCCACTTGGAAAGAGGACTGTTGACTATGGAACTCTTGGTGTTGCTGCTACTTCTGCTTTTGTTCCACAGTTTCACATTGGACATCACCATCATCATCCTCGTCCCAGTGGCTACTATGGTACACCCATGGGGAATTACATTAGAGATGCATCCAATGCTGGCTCGTCTCTTCAACCTCCTTCACTCGCTTATGCTGAACCAAATACTCAATACAAATGA 681 0.467 METGGGFHGYHNLPTTTSGLKLSVSEMNMRAVENNNTGSNNNTHTDDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVDYGTLGVAATSAFVPQFHIGHHHHHPRPSGYYGTPMGNYIRDASNAGSSLQPPSLAYAEPNTQYK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02480 226 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 122 IPR003958 -
Aip01g02480 226 SUPERFAMILY Histone-fold 55 154 IPR009072 GO:0046982
Aip01g02480 226 Gene3D Histone, subunit A 45 160 IPR009072 GO:0046982
Aip01g02480 226 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 173 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aip01g02480 226 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aip01g02480 226 MobiDBLite consensus disorder prediction 204 226 - -
Aip01g02480 226 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Aip01g02480 226 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Aip01g02480 226 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Aip01g02480 226 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02480 Aip-Chr1 124559771 124562179 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02480 5 185 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.245 1.42e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aip01g02480 CBFD_NFYB_HMF 6.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02480 K08065 - gmx:100800011 306.99