Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02479 ATGGCTGAGAAGGCGGAGGTGCAGCTCAAGGAGCTGGGATCCAAGCTTGACACCCTTCCTTCCTCGAAAGACGTTCTTATCAAGCTCTTGAAGCAAGCAAGTACATGCCTTGCTGAGTTGGATCAGTCACCTTCGGTTTCAACATTGGAGTCAATGAAGCCCTTTTTTAATGCAATTGTTAAGCCAGAATTGCTGAAGCACCAAGATAAAGATGTCAAGCTTCTAGTTGCAACCTGTGTGTGTGAAATAACTCGAATCACTGCCCCTGAAGCTCCTTATAGTGATGATATTCTAAAGGAAACCTTTCACTTGATTGTGGGCACTTTCAGAGGTCTAAGCGACACTAATGGTCCTTCCTTTGGCCGAAGAGTTGTTATATTGGAGACTCTTGCAAAATATAGATCGTGTGTTGTAATGTTAGATCTTGAATGTGATGATCTTGTGAATGAAATGTTCAGTACTTTCTTTGCTGTTGCCAGAGATGATCATCCAGAAAGTGTACTGTCCTCCATGCAAACTATAATGGTGGTTCTCTTAGAAGAGAGTGAGGATATCCGCGACGATCTTTTATCTATTATATTGTCTTCATTAGGTCATGAAAAAAAAGATGGTACTATGGCTGCAAGGAAGCTTGCTATGAATGTCATACAGCAATGCATAGGAAAACTTGAACCCAGCATTAAACAGTTTTTGCTATCGCTAATGTCCGGAGATGACAAGCTGGTGAACAGTCAAGTTGAATATCACGGTGTTATCTATGACCTATATTGCTGTGCTCCTCAGATGCTATCTGGAGTTCTCCCTTATGTGACGGGGGAGCTACTGACTGACCAGCTGGAAACCCGTTTGAAAGCAGTGAATTTGGTTGGCAACATAATTACTCTTCCTGGATCTTCCTTTCCTGAAGCATTTCAGCCTATATTTTTAGAATTTTTGAAGAGGTTGGCTGATAGAGTTGTTGAGGTTCGCATGTCTGTCCTTGAGCATGTTAAGAACAGTTTGTTGTCCAGTCCTTCTAGAGCTGAATCTCCTCAAATATTATCTTCCCTATGTGAGCGGCTACTGGATTTTGATGAAAATGTCCGAAAGCAAGTTGTGGCTGTTATCTGTGATGTAGCATGTCATTCACCGAATGCAGTTCCAATTGAAACTGTGAAACTTGTTGCAGAACGTCTTCGTGACAAATCTCTACTTGTTAAAAGGTACACATTGGAGAGATTGGCTGACATGTATAGAATTATTTGTGAGAAGCGCTCTGACAATGTCAATCTTAATGAATATAACTGGATTGTTGGGAAGATCCTTAGATGTTTCTATGATAAAGATTTCAGGTCAGATATAATTGAATCTGTTCTGTGTGGGTCCCTGTTTCCTGCAGAGTTTTCAGTCAGTGAACATGTTAAGCAATGGATTGGGATTTTTTCTTTATTTGATAAAGTTGAGGTCAAGGCTTTTGAAAAGATGCTGGAACAGAAAAGCAGGTTACAACAAGAGATGCAGAAGTATCTATCTCTGAGGCGGACAAGTCAGGGTAAAGATGTTCCCATGGTCCAAAAAAAGATTTTGTTCTGTTTCCGAGTGATGTCCCGTTCATTTATTGACCCTATAAAGGCTGAAGAAAGTTTCCAGATTCTTCATCAATTAAAAGATGCTAATATCTGGAAGATTTTGACAAATCTTGTGGATCCAAATACTAGCATTGACCAAGCTCGTGTTTACCAGGGTGATTTGCTCAAAATTCTTGGTGAGAAGCATCGCCTCTATGAATTTCTGAGTACTTTTTCTGTGAAGTGCTCCTATATGCTTTTCAACAAGGAGCATGTAAAAGCAATTCTTTCAGAAACAGCTGCTCAAAAATCTGCTGAGTGTGCTCAGCATATACTATCTTCCATGAATATACTGGTGATGATTGCTCGTGTCAGTCCATTTCTTCTTACTGGCAGTGAGGAGGAGCTAGTGAATTTACTCAAGAAAAATGATGATTTGATTAAAGAGGGTGCTTTGCGTGTGTTAGCCAAGGCTGGTGCTACTATTTGTGAACAACTTGCAGTTACTTCAAGTTCTGTAGAGCTTATATTGGAGAGACTATGTTTAGAAGGTAGTCGGAGACAGGCCAAGTTAGCTGTCCATGCACTGGCTGCAATATCAAAGGATGACAGCCACAAACCTCTCTCTGTTCTATACAAGAAACTTGTAGATATGCTGCAACAGAAACAACATCTGCCTGCAGTGCTGCAATCTCTGGGATGTATTGCTCAGACCGCAATATCTATCTTTGAAACTAGAGAGGGTGAAGTCAAAGAATTTATTATAGACAAGATTCTGAGATGTGATAGTAAAGAAGATCGCACGCGAGAATCTTGGGATGATAGAAGTGATATTTGTATGTTGAAGATATACGGCATTAAAACCTTAGTAAAGAGCTACTTGCCAGTTAAAGATGCCCATGCTCGTCCTGATATAGATGGTCTTTTGGATATCCTTAGGAACATCCTATCTCATGGTGAAATTTCACAAGAGCTACAGTCCAGTTCAGTTGATAAGGCCCATTTAAAGCTTGCTGCTGCAAAGGCAGTTCTTCGTTTATCGAGGCTGTGGGATCATAAGATACCTGTTAATCTATTCCACCTAACTCTAAGGGTATCAGAGATCAGCTTCCATCAAGCTAGGAAGATTTTCTTAAGTAAAGTTCACCAATATATAAAAGAACATCTTTTGGATGCCAAATATGCGTGTGCTTTTTTGTTCAACCTATTTAGATCTAAGCCAGAGGACTTTGTCGAGGATAAACAGAACCTGGCTGATATTATTCAAATGCTACACCAAGCAAAGACACGACAGCTTTCTGTGCAATCAGATGCAAACTCCTCAACAACTTATCCCGAAGGCATCCTTCCGCACCTAGTTCATGCACTTGCTCACAATTCATGTCCAAATGTTGATGAGTGCAAGGATGTTGGAGCATATGATAATATATACCGGCAGCTGCACTTAGTTATGTCAATGATACTGCAAAAATATGTAGATGCCAAGTCAGAAGCAATGACTGACAAAGAGAATGAAACAATATCTACCATCACCTCTATTCTTGAGAATATCAAGTGTTCTGAAGATATAGTTGATTCGTCAAAATCAAAGAATTCTCATGCAATATGTGACGTTGCGTTAGCAATAACAAAGCAATTGGTGCCAAAGGTTGTTGATTCACAAGGATTTTCCCCTTCAGTTCCTCTACCTCCAATGCTGTACAAAGCATCTGACAAGGAAGGAGATGAAACCGTGGTAAGTGAAGTGAAAACCTGGTTGGCTGATGAAAGTGTCTTGACTCACTTTGAATCTCTTGAACTAGAAGTGGTTCCATCTAAGTCTGCTGATAATGAAACTTCAAAGGACAACGAACAAGATGAAACTGACATGCCTCTGGGAAAGATGTTGAAGCGCATAAAAGCTCAGGCAACAAGTGGCAAAAAGGTGAAAAGGAGTAAGAATGTTACAGCTGAAGTGGAAGATGCTGAAAATGATGATGATATCTTAACTCCAGTCAAACAAAATAACTTGGATAAATCAGGTGTATCTACCAATTTTGAACCTAGTAATGGTCATGAACATTCTTTGAGTACGAATGAACTGAAGAATTCAGAGTATTCATCATCAAGTAAAAAACGAAAAGCTGGAGAAACTACACCTATCTCATCATCTAAGAGTAGGCGGTCATCTACCTCTACGACTTCTCAAAGAGTATCAGGAGAAGACTTTCCTGAAGCTGAATTAATGTTGAGTGCAGGAGTTGAGCCTGATGGAAAAAACAAAAGTAAACAGAGAAAAATGGTCAAAGGCAGTGACAAAGACTTGTTAGTCTCCTCATTAAAACGAAAAAATAAGCACTCTGATAGCTATCATAATGATAAGTCTGACGAACCTGATGATCATGAAATGAAGAGTTCCCATAGTTTTAAACAAAGTAATAAGATGTCAAATACAGCAGGGTCTACAAAAATGGTGAAACGAAAAAATACAGCAGGATTGTCCATGTGCACAATGAAGGAAGATGAAATTGATACTGAAGATCTAATTGGTTGCAGAATTAAAGTTTGGTGGCCCTCGGATAAGAAGTTTTATGGAGGCACTGTTAAGTCTTATGACTCACTAAAAGGAAAGCATGTGATATTATATGATGATGGTGATGTGGAAATACTCCGTTTGGAAAAAGAGAGGTGGGAGCTCATTGACAAGGGTCGCAAGACTTCTAAGGTGGGTTTTCCTCTTGTGCTGTTCCTACCTTTCACCGACTTTATAATTGGTAAACAATCTCCGAAAAAGCCTGTAAGACGTGAGCAACCACATGCGTTGAAAAGTAATTTCCATGAGGAGAATGTAAAAAATTCTTCTGAAGTATCAAATCCTGAAGAAACTACTAGTGAGATGGACTCAGATGGTTCAGAAAAGGAACTGGCTGAAGTGTCTGATGAAGTCATAACAAAAAAGAACGAGTCTAAGAAGAAAGCAACATCAACTTCAAGAGGAAGGAGGCTTCAGAAAAAGAAGAGCTGGAGTCATTTAGAGGAATCAGATGAGGAGAAGCAGGATTATGGTGAAAGGCTTTCTGATGACAATGTGAGCATCCCACAAGGTGGTCAAGACGACATTGATGGCGAAGAAAGAGAAGTGGAGCAATCAAGTGAAGCTTCAAAAGAAAATGATCATGGAGAAGAAGAATCAGATTCTGAAGGGCACCAGGATAACAGCAATGTGGGAGGTAGTCCTATACAAATGGAGAAATCACATATATCATCAAGCCTTGATGGTGCCGGGGTTGCTGAGATTTCTGATGATGAAGCTCCTCTGAGCAAATGGAAACATCGGAAGACAACGTCAGGGAAAAAACGTGAAGTGACGCGCTCTCTTCCAGTTTCCATGACAGCAGATCAGCGAGGAAGTCTGGTCAATGGTCAACCCGCGGTGTCGAGGTGGAATGACAAGCAAGCTTCACGTGGTGACTCTGGACGAGGATGGTTGAGGCTACTGAAAATCACAGTTGTGCGAGGGAAAACATTAGTGATCCGGGATTTCAAGAGCAGTGATCCTTATGTTGTGGTCAAGCTTGGCAATCAGACAGCAAAGACCAGGGTCATCAATAGCTGCTTGAATCCTGTTTGGAATGAAGAGCTAAATTTCACTCTCACTGAACCATTGGGATTTCTCAATTTGGAGGTATTTGATAAAGATGTTTGGAAGGCTGATGACAAGATGGGAAAATCATACCTGAACCTTCAGCCATTGGTGTCTGCAGCTAGATTGAGGGACATTTTGGGGAGTTCATGTGGTGAAACAGCACTGAGGAAGGTGATGCCAGAGAGAGATAACTGTCTTGTCCGTGAAAGCATCATCAAAAATAATGTGAATGGAGAGGTGGTGCAGAATGTTTGGTTAAGGCTTGATGGAGTTGAGTCCGGGGAGCTTGAATTGACCATCAAGTTGATCACTCCTGTTGCCTCTTCGTAG 5502 0.4062 MAEKAEVQLKELGSKLDTLPSSKDVLIKLLKQASTCLAELDQSPSVSTLESMKPFFNAIVKPELLKHQDKDVKLLVATCVCEITRITAPEAPYSDDILKETFHLIVGTFRGLSDTNGPSFGRRVVILETLAKYRSCVVMLDLECDDLVNEMFSTFFAVARDDHPESVLSSMQTIMVVLLEESEDIRDDLLSIILSSLGHEKKDGTMAARKLAMNVIQQCIGKLEPSIKQFLLSLMSGDDKLVNSQVEYHGVIYDLYCCAPQMLSGVLPYVTGELLTDQLETRLKAVNLVGNIITLPGSSFPEAFQPIFLEFLKRLADRVVEVRMSVLEHVKNSLLSSPSRAESPQILSSLCERLLDFDENVRKQVVAVICDVACHSPNAVPIETVKLVAERLRDKSLLVKRYTLERLADMYRIICEKRSDNVNLNEYNWIVGKILRCFYDKDFRSDIIESVLCGSLFPAEFSVSEHVKQWIGIFSLFDKVEVKAFEKMLEQKSRLQQEMQKYLSLRRTSQGKDVPMVQKKILFCFRVMSRSFIDPIKAEESFQILHQLKDANIWKILTNLVDPNTSIDQARVYQGDLLKILGEKHRLYEFLSTFSVKCSYMLFNKEHVKAILSETAAQKSAECAQHILSSMNILVMIARVSPFLLTGSEEELVNLLKKNDDLIKEGALRVLAKAGATICEQLAVTSSSVELILERLCLEGSRRQAKLAVHALAAISKDDSHKPLSVLYKKLVDMLQQKQHLPAVLQSLGCIAQTAISIFETREGEVKEFIIDKILRCDSKEDRTRESWDDRSDICMLKIYGIKTLVKSYLPVKDAHARPDIDGLLDILRNILSHGEISQELQSSSVDKAHLKLAAAKAVLRLSRLWDHKIPVNLFHLTLRVSEISFHQARKIFLSKVHQYIKEHLLDAKYACAFLFNLFRSKPEDFVEDKQNLADIIQMLHQAKTRQLSVQSDANSSTTYPEGILPHLVHALAHNSCPNVDECKDVGAYDNIYRQLHLVMSMILQKYVDAKSEAMTDKENETISTITSILENIKCSEDIVDSSKSKNSHAICDVALAITKQLVPKVVDSQGFSPSVPLPPMLYKASDKEGDETVVSEVKTWLADESVLTHFESLELEVVPSKSADNETSKDNEQDETDMPLGKMLKRIKAQATSGKKVKRSKNVTAEVEDAENDDDILTPVKQNNLDKSGVSTNFEPSNGHEHSLSTNELKNSEYSSSSKKRKAGETTPISSSKSRRSSTSTTSQRVSGEDFPEAELMLSAGVEPDGKNKSKQRKMVKGSDKDLLVSSLKRKNKHSDSYHNDKSDEPDDHEMKSSHSFKQSNKMSNTAGSTKMVKRKNTAGLSMCTMKEDEIDTEDLIGCRIKVWWPSDKKFYGGTVKSYDSLKGKHVILYDDGDVEILRLEKERWELIDKGRKTSKVGFPLVLFLPFTDFIIGKQSPKKPVRREQPHALKSNFHEENVKNSSEVSNPEETTSEMDSDGSEKELAEVSDEVITKKNESKKKATSTSRGRRLQKKKSWSHLEESDEEKQDYGERLSDDNVSIPQGGQDDIDGEEREVEQSSEASKENDHGEEESDSEGHQDNSNVGGSPIQMEKSHISSSLDGAGVAEISDDEAPLSKWKHRKTTSGKKREVTRSLPVSMTADQRGSLVNGQPAVSRWNDKQASRGDSGRGWLRLLKITVVRGKTLVIRDFKSSDPYVVVKLGNQTAKTRVINSCLNPVWNEELNFTLTEPLGFLNLEVFDKDVWKADDKMGKSYLNLQPLVSAARLRDILGSSCGETALRKVMPERDNCLVRESIIKNNVNGEVVQNVWLRLDGVESGELELTIKLITPVASS 1833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1579 1597 - -
Aip01g02479 1833 Gene3D C2 domain 1673 1831 IPR035892 -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1178 1214 - -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1318 1335 - -
Aip01g02479 1833 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1674 1827 IPR035892 -
Aip01g02479 1833 ProSiteProfiles C2 domain profile. 1656 1770 IPR000008 -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1267 1317 - -
Aip01g02479 1833 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 5 1592 IPR039776 GO:0007064
Aip01g02479 1833 PANTHER SISTER CHROMATID COHESION PDS5-LIKE PROTEIN 5 1592 - -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1436 1633 - -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1124 1143 - -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1119 1335 - -
Aip01g02479 1833 SUPERFAMILY ARM repeat 45 952 IPR016024 -
Aip01g02479 1833 Pfam Sister chromatid cohesion protein PDS5 protein 25 1084 - -
Aip01g02479 1833 CDD C2_ArfGAP 1674 1818 - -
Aip01g02479 1833 Coils Coil 645 665 - -
Aip01g02479 1833 Coils Coil 485 505 - -
Aip01g02479 1833 Gene3D - 1354 1405 - -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1222 1249 - -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1475 1504 - -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1437 1458 - -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1556 1578 - -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1515 1534 - -
Aip01g02479 1833 SMART C2_3c 1674 1769 IPR000008 -
Aip01g02479 1833 Pfam C2 domain 1675 1764 IPR000008 -
Aip01g02479 1833 MobiDBLite consensus disorder prediction 1459 1473 - -
Aip01g02479 1833 SUPERFAMILY Tudor/PWWP/MBT 1356 1395 - -
Aip01g02479 1833 Gene3D - 8 465 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02479 Aip-Chr1 124535549 124549265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02479 1671 1827 C2H2 Transcription Factor Family AT4G21160 42.767 2.04e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02479 K11267 - gmx:100797685 2274.2