Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02473 ATGAAGAAATCTGACTTTGGAGATCACTGGAAGCTTGGAATCGAGGATGGTGCGAAGCCTCAGGTGTACAATGAAGAGCATGAGAAGTTGTTATCTGCTGTGGCTGGGTGGGAGACGGTCGTGGTGGTTCATAGTGGTGCCACATATTGTGTACATCTTGAGCGGCACAAACGGGGACGCGTGGAGTGGATGGAGCATGCAAAAGATGATTTTGATGTCAACGATTATGGTGAGGAGGATGAGAAAGAACAAGGAGAAGAGGAAGAAGATGTAGAGAAAAGAACAATTGAGGAAGACCAAAGTAGATGGAATAATGATGAGATGGAACAACTTGAGATACAAATGTCCCAAATCAGAGAGAGAAAGAGATTTCAGAAAGAAATCACACAACCCCAGTCAAAAAACCCTAGCACTGTAAGCCTACACCACCGCCGCAAGGAGTGGCATACTGCCGCGTCCGTCGCACTCAAAGTTCGCCATCCATCCGTCTATCTAGCTTCCCTCGTGATCCAAGTCTTCAACCCCTGTTCGCTGTCACTGATTGCGGCTGCTTCCTCGAGCTCGGCGTCCGTCGTCTTTGTCTGCTCAGGCGCGCTTCCGTCGCCGTTTGTTTGCCGTTCACGTTCGCGTCTTCGTTCAGCTGTCGTCTTCGTTAGCGTTCTTCGCCGTTCACGCTCGCTCGGCGTTCACTGTTCGCGTTCACTGGCTGTTTGCCGTTCGAGTTTGCATTCGTGTGCGTCTGGAAGCCACGTTGCTCTGCTTCAAATACTGCGACCAACCTGTGCGCTCCACCTAGCCGTCGAACTGCTCTCTTTTGTCGCCGCCGTGGTAAGAGAAGAGGAGAAGGAAGAAACCAAGAAGGAGTCCAGAGACAAACAAGGGAAAGAAGCAACAGAGGACATCATTCAGCAAGAGGAGCATGTGACTCTCACCACTCTTTTTGTGGATAGCAAGTATGAGGAGACATTATCCCAGTATGAACTTGCCCTACAAGTTGCACTTAACATGTCTTTATCGGTGGAAGTACGTTTGATCTGCCATGCAAATCGTGCTGCATGCTATCAGAAACTGGTGATCGACACAGTTAAAGAATGCACACAAGCATTAGAACTGAACCCTGCGTACATTAAAGCATTGGCAAGAAGAGGAGAAGCCCATGACAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAGGATCTTAGAAATTGATCCGTCAAATGATCAAGCCAGGAAGGGTATTTGCCGACTTGAGCCGCTTGCTGCAGAAAAGCGGGAAAAGATGAAGGAAGAAATGATGGACAAGTTTTTTGTTGTCTTTATCTTTGTTTTCTAA 1341 0.4787 MKKSDFGDHWKLGIEDGAKPQVYNEEHEKLLSAVAGWETVVVVHSGATYCVHLERHKRGRVEWMEHAKDDFDVNDYGEEDEKEQGEEEEDVEKRTIEEDQSRWNNDEMEQLEIQMSQIRERKRFQKEITQPQSKNPSTVSLHHRRKEWHTAASVALKVRHPSVYLASLVIQVFNPCSLSLIAAASSSSASVVFVCSGALPSPFVCRSRSRLRSAVVFVSVLRRSRSLGVHCSRSLAVCRSSLHSCASGSHVALLQILRPTCALHLAVELLSFVAAVVREEEKEETKKESRDKQGKEATEDIIQQEEHVTLTTLFVDSKYEETLSQYELALQVALNMSLSVEVRLICHANRAACYQKLVIDTVKECTQALELNPAYIKALARRGEAHDKLEHFEEAIADMKRILEIDPSNDQARKGICRLEPLAAEKREKMKEEMMDKFFVVFIFVF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02473 446 MobiDBLite consensus disorder prediction 125 144 - -
Aip01g02473 446 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 101 438 - -
Aip01g02473 446 Gene3D Tetratricopeptide repeat domain 287 434 IPR011990 GO:0005515
Aip01g02473 446 Pfam Tetratricopeptide repeat 377 409 IPR013105 -
Aip01g02473 446 SMART tpr_5 376 409 IPR019734 GO:0005515
Aip01g02473 446 SMART tpr_5 344 375 IPR019734 GO:0005515
Aip01g02473 446 Coils Coil 108 128 - -
Aip01g02473 446 MobiDBLite consensus disorder prediction 72 99 - -
Aip01g02473 446 SUPERFAMILY TPR-like 313 420 IPR011990 GO:0005515
Aip01g02473 446 MobiDBLite consensus disorder prediction 74 94 - -
Aip01g02473 446 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02473 Aip-Chr1 124421669 124431293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02473 254 432 Calmodulin-binding Proteins AT3G25230 30.159 1.36e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02473 K24926 - aip:107613396 528.865