Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02464 ATGGGCCTGAGCTCTGTACCTTTCAGAAATCAAACCAAAAAAAAAAGGAGGAGAAGAAAATGGAAAGGGAGGGCGAAAGGATTGAGACTGAAAGAACATAGAAGGAAGAGTGTGGAATCTTTGATCGTCGGTGTTGAGCTACTCTTGTCTTGTGGTGTGTTCTCTTGTCCCCTCCTGCAATTAACCAAGCGATCCCTTTTCCTCTTTTTCTGTTACTTCATAGGAGCACAGCCAACTGCTATGAAACCCTCAATCGATGACGTCAACTTACCCCCCGCCGCCGCCACCAACTCCACCGCACCATCCAAGCCTGTCTTCCTTACCAAAGCCCAGCGCGAGCAATTGGCACTCCAGCGCCGTCAGGAGGAAATCGCCAACCAGAAGCGCCGCCAAGAGCAGCTCCTTTCTCGTAATCGACCTTCCTCCGATTCCGCGGCCGATTCCAAACCCTCCGCTGACTCCGACCGGCGTGACCGCGACCGTGACAGGGACAGGGATAGGGATAGGGACAGGGACAGAGACCGCGAACGAGAACGAGAACGGGAACGGGAACGGGAGCGCGATAGGGCACGCGATCGGGACCGCGAGGCGGAGCGACGGAACCGAGAGAGGGAGCGCGAAGAGGAAAGTAGGGCTCGGGAACGAGCACGGTTGGAGAAATTGGCGGAGCGGGAGCGCGAGAAGGAGCTCGAATCCATCAAAGAACAGTACCTTGGTTCGAAGAAGCCGAAGAAGCGCGTGATCAAGCCCAGCGAGAAGTTCCGTTTCTCCTTCGACTGGGAGAACACCGAGGACACATCTCGCGACATGAACTCCCTCTATCAGAACCCTCACGAGGCTCAGCTCCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGAGATGCGCGAGCAGATCCGTCGCAAGGACGGCGTCGAGGAGAAGCCCGAGGAGGCCGATGCCCAGCGCCGCAAGGAGGCTGCTGCCGACCTCTACGACACCTTCGACATGAGGGTTGACCGCCATTGGAGCGAGAAAAAGCTTGAGGAAATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTACAACATCTCCTACAAGGGTTCCAAGATACCTCGCCCCATGCGGAGCTGGGTAGAGAGCAAGCTCAGCAATGAGCTTCTGAAGGCGGTGGAGAAGGCTGGGTACAAGACCCCTTCCCCCATTCAGATGGCTGCAATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCCGGTAAGACTGCTGCTTTTGTTCTTCCCATGTTGAGTTACATTACTAGGCTTCCCCCCATGAGTGAGGAGAATGAGGCTGAGGGTCCCTATGCTGTTGTTATGGCTCCGACTCGCGAGCTTGCCCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAATATCTGGGTATTAAGGTTGTCTCCATTGTTGGTGGTCAGTCCATTGAGGAACAAGGGTTTAAGATTAGGCAAGGCTGTGAGATTGTCATTGCTACTCCAGGTCGTTTGATAGATTGTTTAGAGCGGCGATATGCTGTGCTGAACCAATGCAATTATGTTGTTCTTGATGAGGCGGATCGCATGATTGATATGGGTTTTGAGCCACAGGTGATGGGTGTCTTGGATGCCATGCCTTCCAGCAACTTGAAACCTGAGAATGAAGATGAGGAGCTTGATGAGAAGAAGATTTATAGGACCACTTATATGTTCAGTGCCACCATGCCTCCGGCAGTGGAGAGGCTTGCTAGGAAGTATCTGAGGAATCCTGTTGTGGTGACCATTGGCACTGCCGGAAAGGCAACTGACTTGATCAGCCAACATGTGATAATGATGAAGGAATCTGAGAAATTCCATAAGCTTCAAAGGTTGCTTGATGAGCTTAATGACAAGACGGCAATTGTGTTTGTTAACACCAAGAAGAATGCGGATATGGTTGCCAAGAATTTGGACAAGGAAGGGTATCGTGTGACTACATTGCATGGAGGGAAGTCGCAGGAGCAGAGAGAGATTAGTCTAGAAGGGTTTAGGACCAAGAGATACAATGTTCTTGTTGCCACAGATGTTGCTGGACGTGGTATTGACATACCCGATGTGGCTCATGTGATAAACTATGATATGCCTGGGAACATTGAAATGTACACGCACCGCATTGGGCGTACTGGTCGTGCAGGAAAGACTGGTGTGGCAACAACATTCCTCACTCTTCAGGACACTGATGTCTTCTATGACCTCAAACAGATGCTTATTCAAAGCAACAGCCCTGTTCCACCTGAATTGGCAAGGCACGAAGCCTCCAAGTTCAAGCCAGGGACTATTCCCGACAGACCACCTAGACGAAATGACACTGTGTTTGCACATTAG 2412 0.5232 MGLSSVPFRNQTKKKRRRRKWKGRAKGLRLKEHRRKSVESLIVGVELLLSCGVFSCPLLQLTKRSLFLFFCYFIGAQPTAMKPSIDDVNLPPAAATNSTAPSKPVFLTKAQREQLALQRRQEEIANQKRRQEQLLSRNRPSSDSAADSKPSADSDRRDRDRDRDRDRDRDRDRDRERERERERERERDRARDRDREAERRNREREREEESRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRRKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFHKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02464 803 MobiDBLite consensus disorder prediction 10 25 - -
Aip01g02464 803 MobiDBLite consensus disorder prediction 149 242 - -
Aip01g02464 803 PANTHER - 165 796 - -
Aip01g02464 803 Coils Coil 295 321 - -
Aip01g02464 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 762 IPR027417 -
Aip01g02464 803 SMART helicmild6 660 741 IPR001650 -
Aip01g02464 803 Coils Coil 173 231 - -
Aip01g02464 803 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 383 411 IPR014014 GO:0003724
Aip01g02464 803 Pfam DEAD/DEAH box helicase 408 598 IPR011545 GO:0003676|GO:0005524
Aip01g02464 803 MobiDBLite consensus disorder prediction 1 25 - -
Aip01g02464 803 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 538 546 IPR000629 -
Aip01g02464 803 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 636 780 IPR001650 -
Aip01g02464 803 MobiDBLite consensus disorder prediction 295 331 - -
Aip01g02464 803 Coils Coil 107 137 - -
Aip01g02464 803 MobiDBLite consensus disorder prediction 778 803 - -
Aip01g02464 803 SMART ultradead3 402 624 IPR014001 -
Aip01g02464 803 MobiDBLite consensus disorder prediction 125 244 - -
Aip01g02464 803 CDD DEADc_DDX23 394 610 - -
Aip01g02464 803 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 165 796 - -
Aip01g02464 803 Pfam Helicase conserved C-terminal domain 633 741 IPR001650 -
Aip01g02464 803 Coils Coil 627 647 - -
Aip01g02464 803 Gene3D - 344 613 IPR027417 -
Aip01g02464 803 MobiDBLite consensus disorder prediction 771 803 - -
Aip01g02464 803 CDD SF2_C_DEAD 621 750 - -
Aip01g02464 803 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 414 609 IPR014001 -
Aip01g02464 803 Gene3D - 614 801 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02464 Aip-Chr1 124271134 124273873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02464 381 763 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 1.91e-60 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02464 K12858 - gmx:100799264 1129.39