Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02454 ATGGATTGTGTTGCCACTGCAATGGATCTTGTCAATGGAGGTAACAGTCTAGCTTCCAAGCAGCGGTTACGCTGGACCAATGACCTCCACGAACGCTTCGTCGATGCGGTTGCTCAACTTGGTGGGTCAGATCGTGCCACACCTAAAGGTGTCCTCAGAGTTATGGGTGTGCAAGGGTTGACAATTTACCATGTCAAAAGTCATTTACAGAAATACCGACTAGCAAAATATCTACCTGGCTCCTCAACTGATGGGAAAAACGCCGAGAAGAAAGAAACAGAGGATGTACTTTCTAATCTTGATGGTTCATCTGGGATGCAAATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTGCATGAGCAATTAGAGGTGCAGAGACAACTACAACTAAGGATAGAAGCGCAGGGTAAATACTTGAAGAAGATTATTGAAGAGCAGCAGCGGCTCGGCGGTGTTCTTACAGAAGCACCTGACTGGGGCGCTACAGCTCTGGTTCCAGGAGTTACACACCAAGAAGATAATAAGACCGATCAAGCAACCCCTGCCACAACCTCTGAGAGCCCCCTTCTGGAGGTAGCTGTGAAAGAACAAGCCCTGGCTAAGAGTCTTTCAATTGATGAATCCTTTTCATCTCAGCATGAACCGTTGACACCTGATTCTGGTTGCCATGTTGGCAACCCCACTGGCGGCCCTGAAGAGGAGAGATCAACAAAGAAACAGCGCTTGAACATAGATGGATCATATTCTAGACCAGAAATGCTGCTTCCGCATCAAATACTGGAGTCAAATGTCTCATCAAACAAGCAACCAAATGTTGTTTCTACTCCCCAGGAGGAATATGATCATTCAATGGATATAGCTGCCAAAAGTGTGACAAGGAATTCCAGCAGGGTTGTATGA 912 0.4638 MDCVATAMDLVNGGNSLASKQRLRWTNDLHERFVDAVAQLGGSDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPGSSTDGKNAEKKETEDVLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLGGVLTEAPDWGATALVPGVTHQEDNKTDQATPATTSESPLLEVAVKEQALAKSLSIDESFSSQHEPLTPDSGCHVGNPTGGPEEERSTKKQRLNIDGSYSRPEMLLPHQILESNVSSNKQPNVVSTPQEEYDHSMDIAAKSVTRNSSRVV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02454 303 SUPERFAMILY Homeodomain-like 19 74 IPR009057 -
Aip01g02454 303 MobiDBLite consensus disorder prediction 264 282 - -
Aip01g02454 303 Pfam MYB-CC type transfactor, LHEQLE motif 106 152 IPR025756 -
Aip01g02454 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 2 295 - -
Aip01g02454 303 MobiDBLite consensus disorder prediction 173 192 - -
Aip01g02454 303 MobiDBLite consensus disorder prediction 211 245 - -
Aip01g02454 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Aip01g02454 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Aip01g02454 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 295 IPR044848 GO:0003700
Aip01g02454 303 MobiDBLite consensus disorder prediction 264 303 - -
Aip01g02454 303 Pfam Myb-like DNA-binding domain 23 73 IPR001005 -
Aip01g02454 303 MobiDBLite consensus disorder prediction 173 191 - -
Aip01g02454 303 Coils Coil 109 129 - -
Aip01g02454 303 Gene3D - 19 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02454 Aip-Chr1 124136229 124139368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02454 55 271 G2-like Transcription Factor Family AT2G01060 64.977 2.20e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip01g02454 Myb_DNA-binding 4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02454 - - aip:107637104 586.645