Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02433 ATGAGAGAAAGAATACTAGTTCTTTTACTGCTTGTTTTCAATTCTCTGTTGGTTGCAAAAGTCGAAACCGCTGATGAGGATTTGGTCACCCTAAAGTCTCTTATGGATACCTTGAAGAATACCCCTCCTAATTGGGGGGGTTCGGATCCTTGTGATGCTTGGGATGGAATTAAGTGTGAGAATTCACGTGTTACATCCATAACATTGTCAAGCATGGGTTTGGAAGGTGAACTTTCTGGAGATATCGGATCACTAACCGAATTGGAGACTTTGGATCTTTCTTACAACAAGGACTTGACTGGGCCACTTCCAAGAGCCATTGGAGAGTTGAGGAAACTGTCAACCTTAATTCTTGTTGGCTGTAGTTTCAATGGTCCTATTCCGGATGAAATCGGATTTCTGCAGGAGCTTCGCTTTATATCCTTAAATTCCAATAGCTTCACTGGGAGGATTCCACATTCTATTGGTAATCTATCGAACCTATATTGGTTAGATTTAGCTGACAATGAGCTTCAAGGACCTATACCAATTTCTAGTGGCAGTGTACCTGGTCTTGATAAGTTGCACCATGCCAAACATTTTCATCTTGGGAAGAATAATCTCTCAGGCAATATTCCTCCTCAACTTTTTAGCTCGGAAATGGCTCTGATTCATCTGCTTTTGGAAAGCAATAATCTCATAGGCAAGATTCCATCTACACTTGGATTGGCTAAGAACCTGGAGGTCTTGCGCTTGGATGGTAATTCGTTAAGTGGACCTGTGCCTCCAAACATCAACAATCTTACCAATGTTCAAGAGCTGTACTTGTCGAACAATAAACTTTCAGGCACCCTGCCCAGCCTTAGTGATATGAGTGCCCTCAACTACCTGGATCTGAGCAACAACACTTTTGAGCCACTGGATTTCCCGTCGTGGATTTTGACTCTTACTTCTTTAACAACATTAAATATGGAGAACACACAACTTCAAGGAGAGGTTCCTGATTCTTTGTTTAGTTTAGCCAGTTTGCAGACTGTGGTGTTAAAAGACAACAAAATAAATGGAACCTTGAATGTCGGCTCCACCTACAGCAAGCATCTGCAACTTATTGATCTTCAAAATAATGCAATTGACAATTTTGAGCAAAAACATGACCATTTAAGTGTCAGGATAATGCTTAAGGGTAACCCAATTTGCTATGAAACTGTAGAGGGAATAGCTACTCCCTACTGCTCCGATAATCAGGCTAATCAACTGTCATATAGAACTCCATGGAATAACTGTCAGCCTAGTACCTGCAGTTTGGAACAGGTTGCTAGCCCCAACTGTGCATGTGCTTATCCATATACAGGAACTTTAACTTTCAGAGCACCTTCCTTTTCAGACCTTGGAAACAAGTCTTACTTCCAACAGCTTGAGAAGGGTCTAATGCAATCTTTTGAGTCTCATCATCTACCTGTTGATTCTGTTTTGTTGAGTCATCCAACTGAGGATCCAGATCACTATCTTGAATTGAGTTTACAAGTCTTCCCAGCAGGGCAGGATCGTTTCAATCGAACAGGGGTTTATACCATTGGTTTTCTGCTAAGCAACCAGACTTTTAAGCCTCCTAAAGTTTTTGGACCGTTTTACTTTGATGCAGATAAATATGAACACTTTGGGAACTCAGGTACTATGGAGTCGAGCAAATCAGTTAACATTGGAATCATAGCTGGAGCAGCAGTTGGTGGTTGTGTGCTGGTACTGTTATTAGTGGTAGCAGGTGTTTATGCTTTCTGCCAAAAGAAAAGAGCCGAAAGGGCAATTGGACAAAGCAATCCTTTTAGACGATGGGATACAGCTGAGAGTAAGGGTGACATGCCTCAGTTGAAAGAAGCACGTCGGTTTTCTTTCGAAGAGCTTAAAAGATACACCAGAAATTTTTCTCAAGCCAATGATATTGGATCTGGGGGTTATGGGAAGGTTTACAAGGGAACCCTCCCCAATGGACAATTGCTAGCAATAAAAAGAGCTCAAAGAGAGTCTAAGCAGGGAAGGCTTGAGTTCAAAGCTGAGATTGAGCTCCTATCAAGGGTCCACCACAAGAATCTTGTTACCCTTATAGGATTCTGCTTTGAGCATGAAGAACAAATGCTGGTTTATGAGTATGTTCCAAATGGAACATTAAAGGACACTCTCACAGGGAAATCAGGGATTAGATTGGATTGGGTTAGAAGGCTAAAAGTTGCACTTGGAGCTGCACAGGGTTTGACTTATCTTCATGAACTTGCTGATCCTCCCATCATACATAGGGATATCAAATCAAACAATGTTTTGCTAGATGAGTGCCTAAACGCCAAAGTTGGTGATTTTGGTCTCTCCAAGTCTATTGTTGATCCCGAAAAAGATCACGTTACCACTCAAGTTAAAGGAACAATGGGTTACATGGATCCAGAGTACTATATGAGTCAACAACTGACAGAGAAGAGTGATGTATATAGCTTTGGAGTGCTGATGTTGGAGATTATATCTGCAAGAAGACCAATAGAAAGAGGGAAGTACATTGTGAAAGAGGTTAGAAATGCAATGGACATGACAAAAGTGCTTTGTGGTCTGCATGAAATTATTGACCCCAGCATTGGTCTAGGGGCCTCTAGCAGCATTGGGCTTGTTGGTCTGGACAAGTTTGTGGATTTGGCTATGAAATGTGTTTCAGATTCAGGTGTTGAGAGGCCAAAGATGAGTGAGGTTGTGAGAGAACTAGAGAATATATTGCATCATTCATTAGCAGCTGGTGGTTCAAATGATGAATCAGGTTCCATGATTTCTTCGAGTTGTGAAGAAGTTAGCAGAGGTAGTTCTAGTTGCCATCCTTACAGCAGTGAGTCCTTTGATTTGAAAGCTGCACTTTCATATCCAAAAGTGGAACCCAAGTAA 2895 0.4149 MRERILVLLLLVFNSLLVAKVETADEDLVTLKSLMDTLKNTPPNWGGSDPCDAWDGIKCENSRVTSITLSSMGLEGELSGDIGSLTELETLDLSYNKDLTGPLPRAIGELRKLSTLILVGCSFNGPIPDEIGFLQELRFISLNSNSFTGRIPHSIGNLSNLYWLDLADNELQGPIPISSGSVPGLDKLHHAKHFHLGKNNLSGNIPPQLFSSEMALIHLLLESNNLIGKIPSTLGLAKNLEVLRLDGNSLSGPVPPNINNLTNVQELYLSNNKLSGTLPSLSDMSALNYLDLSNNTFEPLDFPSWILTLTSLTTLNMENTQLQGEVPDSLFSLASLQTVVLKDNKINGTLNVGSTYSKHLQLIDLQNNAIDNFEQKHDHLSVRIMLKGNPICYETVEGIATPYCSDNQANQLSYRTPWNNCQPSTCSLEQVASPNCACAYPYTGTLTFRAPSFSDLGNKSYFQQLEKGLMQSFESHHLPVDSVLLSHPTEDPDHYLELSLQVFPAGQDRFNRTGVYTIGFLLSNQTFKPPKVFGPFYFDADKYEHFGNSGTMESSKSVNIGIIAGAAVGGCVLVLLLVVAGVYAFCQKKRAERAIGQSNPFRRWDTAESKGDMPQLKEARRFSFEELKRYTRNFSQANDIGSGGYGKVYKGTLPNGQLLAIKRAQRESKQGRLEFKAEIELLSRVHHKNLVTLIGFCFEHEEQMLVYEYVPNGTLKDTLTGKSGIRLDWVRRLKVALGAAQGLTYLHELADPPIIHRDIKSNNVLLDECLNAKVGDFGLSKSIVDPEKDHVTTQVKGTMGYMDPEYYMSQQLTEKSDVYSFGVLMLEIISARRPIERGKYIVKEVRNAMDMTKVLCGLHEIIDPSIGLGASSSIGLVGLDKFVDLAMKCVSDSGVERPKMSEVVRELENILHHSLAAGGSNDESGSMISSSCEEVSRGSSSCHPYSSESFDLKAALSYPKVEPK 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02433 964 Coils Coil 21 41 - -
Aip01g02433 964 Gene3D Transferase(Phosphotransferase) domain 1 710 930 - -
Aip01g02433 964 ProSiteProfiles Protein kinase domain profile. 634 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02433 964 Gene3D Ribonuclease Inhibitor 22 179 IPR032675 -
Aip01g02433 964 Gene3D Ribonuclease Inhibitor 180 278 IPR032675 -
Aip01g02433 964 ProSitePatterns Protein kinases ATP-binding region signature. 640 662 IPR017441 GO:0005524
Aip01g02433 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672|GO:0006468
Aip01g02433 964 MobiDBLite consensus disorder prediction 916 947 - -
Aip01g02433 964 SUPERFAMILY L domain-like 58 390 - -
Aip01g02433 964 SMART serkin_6 634 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02433 964 Pfam Protein tyrosine and serine/threonine kinase 637 842 IPR001245 GO:0004672|GO:0006468
Aip01g02433 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 5 950 - -
Aip01g02433 964 MobiDBLite consensus disorder prediction 919 947 - -
Aip01g02433 964 ProSitePatterns Protein kinases ATP-binding region signature. 866 888 IPR017441 GO:0005524
Aip01g02433 964 ProSiteProfiles Leucine-rich repeat profile. 263 285 IPR001611 GO:0005515
Aip01g02433 964 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 950 - -
Aip01g02433 964 Gene3D Phosphorylase Kinase; domain 1 604 709 - -
Aip01g02433 964 Gene3D Ribonuclease Inhibitor 279 411 IPR032675 -
Aip01g02433 964 CDD STKc_IRAK 640 910 - -
Aip01g02433 964 SUPERFAMILY Protein kinase-like (PK-like) 620 914 IPR011009 -
Aip01g02433 964 Pfam Leucine rich repeat 239 295 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02433 Aip-Chr1 123953323 123958607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02433 7 964 Receptor kinase-like Gene Family AT5G49760 55.047 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Aip01g02433 PK_Tyr_Ser-Thr 8.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02433 - - gmx:100811702 1388.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02433 01 123953323 123958607 Aip04g00707 04 8740809 8751361 PCT