Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02430 ATGGCAATTGCAGCGCCGAATTCATCTCCGACGATGAGTCTGAGTCACAGCCACAGCCACGAGGACGGAGGGACAACGACGGCGGCGTCCACCACGAACGACAACCTGAACGGGAACGGGAAGCAAGAGGATGATGATCACGAGCATGACATGGTGATGCCGGGGTTTCGTTTTCACCCGACAGAAGAAGAGCTGGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAACGTTTCAACGTTGAGCTCATTACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCTTTGGCGGCGATAGGAGAGAAGGAGTGGTATTTCTATGTGCCTCGAGACAGAAAATACAGAAACGGAGATCGTCCGAATCGAGTGACGACGTCGGGTTATTGGAAGGCAACGGGAGCAGATAGGATGATAAGGACGGAGAATTTCAGGTCCATCGGCCTCAAGAAAACCCTAGTTTTCTACTCTGGGAAAGCTCCTAAAGGCATCCGTACAAGTTGGATTATGAACGAGTACCGTTTGCCCCAACACGAAACTGAACGATACCAAAAGGCGGAGATATCGCTGTGCCGGGTTTACAAGAGAGCTGGAGTTGAAGATCATCCATCGTTGCCGCGGTGTCTGCCAACAAGGGCTCCATCTTCAAGAACTGTTGATCACCAGAAGAACAAGCAGCAGCCTCACAACGATCAACTCAACATGGGATTTGGGGGGAACACCGCCGATGGAGCTTCTGATAATCGTGATCATGATGTAACCACCGCTCTCGCCCTCTCCAAACACAACACAAATAATACTAATAATGCTTATCGTGCTCCTTCAATGGGACTCCCACCGCTGCTTCTTCCCTTGGACGACGAAGCCGCCTTCGTCCTCATGCAGCAGCAGCACCATGCTGGCCCTTCTTCCGGCACCACCATGATGGATGATCTCAACAGGCTTGTAAGCTATCAACACCAGTACTACAACAGCAGCAGTAGCAGTAGTAACAATAATAATCCCAATCATCATCATCACCTGTTAATGCATCAACAACAACAACAACAACAACAACAGCAGCAGCAGCAAAATCCTCCTGCAATAATGTCTCTGAATAACACTCCTTCTCCGCTTGCAACCGCCTTCTCTGACCGCCTGTGGGAGTGGAATCCACTCCCGGAGGCCAACCAGCGGCAGTACAGCAACATGTCCTTCAAGTAA 1212 0.5058 MAIAAPNSSPTMSLSHSHSHEDGGTTTAASTTNDNLNGNGKQEDDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRAPSSRTVDHQKNKQQPHNDQLNMGFGGNTADGASDNRDHDVTTALALSKHNTNNTNNAYRAPSMGLPPLLLPLDDEAAFVLMQQQHHAGPSSGTTMMDDLNRLVSYQHQYYNSSSSSSNNNNPNHHHHLLMHQQQQQQQQQQQQQNPPAIMSLNNTPSPLATAFSDRLWEWNPLPEANQRQYSNMSFK 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02430 403 MobiDBLite consensus disorder prediction 205 252 - -
Aip01g02430 403 SUPERFAMILY NAC domain 52 198 IPR036093 GO:0003677|GO:0006355
Aip01g02430 403 MobiDBLite consensus disorder prediction 326 372 - -
Aip01g02430 403 ProSiteProfiles NAC domain profile. 52 199 IPR003441 GO:0003677|GO:0006355
Aip01g02430 403 MobiDBLite consensus disorder prediction 1 52 - -
Aip01g02430 403 Gene3D NAC domain 61 202 IPR036093 GO:0003677|GO:0006355
Aip01g02430 403 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 398 - -
Aip01g02430 403 MobiDBLite consensus disorder prediction 1 38 - -
Aip01g02430 403 Pfam No apical meristem (NAM) protein 54 178 IPR003441 GO:0003677|GO:0006355
Aip01g02430 403 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 26 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02430 Aip-Chr1 123922160 123924101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02430 25 403 NAC Transcription Factor Family AT2G02450 49.428 2.99e-118 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip01g02430 NAM 4.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02430 - - gmx:100792622 482.256